Non-Coding RNA Search

Ss1.1-Pig3-SRG8016M05.5

Sequence:


               
               TGAAATCTGAAGCACTAACTGTTTGCCAGAGAGCAAGAGGAGAAGTTGGTGTGGTCCATA
CAGGTCATCCTCTTTGCAGGGGCTGGAAGAATGAATGGAGGATGCAGAGAAGCCCGCAAA
CAAGGTACCTGCCACACGTACTGTTTACAACAGCTGCGCCTAATTTAAAGCAACAAAACT
TCAAAGAAAGGAAAGAACATCTTCTGGAAACATCAGGATGATCTGACTCCAGGCACTGAC
ACCATCATCCATCAGAAGTCATGACCTGTGATTTGAGGGTATGAATTAGATCGTAGATTC
TCAAGAGAATTGATGCCCTTTGGCAACTGTAAAATGAAGAACTCTGTATCATTTTGTTGA
GGATGAGTGATGTAGTTTTTTGTTTTTGTTTTTTAATACGATGGCTTTAAGTGAAGACAG
GGCCACACAAATTGCATGACTAACTCCTCTCAAAAGTTAGATATCTTTTGCAGCCTACTC
ACTGAAGTCATTTACAGTTCTTAATACCAGCAAAGTGGATATAATTGCACAGTGGGATTT
ATTCTAGATGAATCAGGATATGGGGGAGAAAAATGGACACATTAAGAAGAAAAATTAAAT
TGAGCACTTAAAATAATTGACCAAAGAAAATGGTCAATGTATGTTTTATCTTTTCTTCCT
TTAAAAATACATGTTGTATGGAAATTGTGATGAGGGGAAAAAAAAAAAAAAAAAAAAAAA
AAGAAAAAACCCACACACAATTAAAAGGGACAGGTACCTGACTGGGTTTTCCCATCTCTT
CCCCCAAATGTCCAGCTCACAGGAACTCCTATGGTCCACCTCTGTGCAGAGATGAAAATC
TTTCCTTTCCAGAGTCAAAGTCAGCTCTCTGAATGTTTATAGCCTAAAATTAGTGTCTGT
GAAGCTGGTAAGACTGTTGCTTTGAACATTGGTGTTTTAGGCAGTTTCCAGGTAACACTG
AAATGACCGTTTCTTAGCACTTGCCAGACCTATGAACAATTGTTAAAATCTAAATTAAAC
CCATATTAAACTGACTTTTTTTTTTGACATCAAAGTGATGCCAAGATACCTGATATGATA
CCCAGAGTGAGTATGGAAAAGAGGGACTCTCACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAATCTGAAGCACTAACTGTTTGCCAGAGAGCAAGAGGAGAAGTTGGTGTGGTCCATA
CAGGTCATCCTCTTTGCAGGGGCTGGAAGAATGAATGGAGGATGCAGAGAAGCCCGCAAA
CAAGGTACCTGCCACACGTACTGTTTACAACAGCTGCGCCTAATTTAAAGCAACAAAACT
TCAAAGAAAGGAAAGAACATCTTCTGGAAACATCAGGATGATCTGACTCCAGGCACTGAC
ACCATCATCCATCAGAAGTCATGACCTGTGATTTGAGGGTATGAATTAGATCGTAGATTC
TCAAGAGAATTGATGCCCTTTGGCAACTGTAAAATGAAGAACTCTGTATCATTTTGTTGA
GGATGAGTGATGTAGTTTTTTGTTTTTGTTTTTTAATACGATGGCTTTAAGTGAAGACAG
GGCCACACAAATTGCATGACTAACTCCTCTCAAAAGTTAGATATCTTTTGCAGCCTACTC
ACTGAAGTCATTTACAGTTCTTAATACCAGCAAAGTGGATATAATTGCACAGTGGGATTT
ATTCTAGATGAATCAGGATATGGGGGAGAAAAATGGACACATTAAGAAGAAAAATTAAAT
TGAGCACTTAAAATAATTGACCAAAGAAAATGGTCAATGTATGTTTTATCTTTTCTTCCT
TTAAAAATACATGTTGTATGGAAATTGTGATGAGGGGAAAAAAAAAAAAAAAAAAAAAAA
AAGAAAAAACCCACACACAATTAAAAGGGACAGGTACCTGACTGGGTTTTCCCATCTCTT
CCCCCAAATGTCCAGCTCACAGGAACTCCTATGGTCCACCTCTGTGCAGAGATGAAAATC
TTTCCTTTCCAGAGTCAAAGTCAGCTCTCTGAATGTTTATAGCCTAAAATTAGTGTCTGT
GAAGCTGGTAAGACTGTTGCTTTGAACATTGGTGTTTTAGGCAGTTTCCAGGTAACACTG
AAATGACCGTTTCTTAGCACTTGCCAGACCTATGAACAATTGTTAAAATCTAAATTAAAC
CCATATTAAACTGACTTTTTTTTTTGACATCAAAGTGATGCCAAGATACCTGATATGATA
CCCAGAGTGAGTATGGAAAAGAGGGACTCTCACTAT

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               22-172, gnl|bosTau2|chr17 (20189072-20188922)
               

               
               22-172, gnl|Hg17|chr4 (124082771-124082930)
               


               
               194-704, gnl|bosTau2|chr17 (20187418-20186916)
               

               
               194-704, gnl|Hg17|chr4 (124085976-124086847)
               

               
               194-704, gnl|Mm7|chr3 (37150290-37150723)
               


               
               737-1112, gnl|bosTau2|chr17 (20186916-20186541)
               

               
               737-1112, gnl|Hg17|chr4 (124086847-124087305)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-172, gnl|bosTau2|chr17 (20189072-20188922)
               

               
               22-172, gnl|Hg17|chr4 (124082771-124082930)
               


               
               194-704, gnl|bosTau2|chr17 (20187418-20186916)
               

               
               194-704, gnl|Hg17|chr4 (124085976-124086847)
               

               
               194-704, gnl|Mm7|chr3 (37150290-37150723)
               


               
               737-1112, gnl|bosTau2|chr17 (20186916-20186541)
               

               
               737-1112, gnl|Hg17|chr4 (124086847-124087305)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.236967)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)

	22-172, gnl\|bosTau2\|chr17 (20189072-20188922)
	22-172, gnl\|Hg17\|chr4 (124082771-124082930)

	194-704, gnl\|bosTau2\|chr17 (20187418-20186916)
	194-704, gnl\|Hg17\|chr4 (124085976-124086847)
	194-704, gnl\|Mm7\|chr3 (37150290-37150723)

	737-1112, gnl\|bosTau2\|chr17 (20186916-20186541)
	737-1112, gnl\|Hg17\|chr4 (124086847-124087305)