Non-Coding RNA Search

Ss1.1-Pig3-SRG8016M19.3

Sequence:


               
               AACTTGAACTACAAATTACCTCCATGTATATTATTGGCCATAGTTAACTAGAAGGTTATA
AATAGATACTTAATGCAATCTTTTTTTTTTTTTTTCTGATATTAGCCAATGGGAGAGTTA
ACAGTGTCTGGGTCACATCCCCTTTTTTGTGTTCAACACAGTGAAGGTTATCTGCTTTTT
AAATTAATTTATTTCTGATATCTAAAGCTGTGTTTTGTGCAAAAACTTAGTGAGGAAAGC
CCTGTCTTTTGTTGTAATCTGAATAATTTCTCAGGATATTTTTGCACTGCTGAAAAGCAG
TGCCATTACCAATTAATTCTTGCCAGGAGTGAGAGAGAGCTGCATCTTTAATTGAAACAT
ACTTAGTATTACTGGGTGTATAGAGTTCTTCCCTTTTTTTGTACTGGAAGATATTTCACT
CTGGTGACACTCTGGTACACTCTGGGGTTCTCGAATCTTGTCTGCTGTATAGTTTACTTT
TCCATATTGATTCCATGTATTTATGAGAAGATACTGTCTCCCATTTTATTACACATTTTA
AAGCCAACTAATGAAGGCAGCTGAGTCCCTCCAAAATTTTTCTTTTTAAATTTCTAATGA
ATTTGTCACACCGTACTGAAATACAGCAGCCCGTCACTGATGGGCTGATCTAGCAATGTT
AAGTATATTTACAGAATATGCAGTTACCTTTATTTATATATTTTGCAAGAAATCTTTTCT
GAATGATAAATGCATTTCAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTGAACTACAAATTACCTCCATGTATATTATTGGCCATAGTTAACTAGAAGGTTATA
AATAGATACTTAATGCAATCTTTTTTTTTTTTTTTCTGATATTAGCCAATGGGAGAGTTA
ACAGTGTCTGGGTCACATCCCCTTTTTTGTGTTCAACACAGTGAAGGTTATCTGCTTTTT
AAATTAATTTATTTCTGATATCTAAAGCTGTGTTTTGTGCAAAAACTTAGTGAGGAAAGC
CCTGTCTTTTGTTGTAATCTGAATAATTTCTCAGGATATTTTTGCACTGCTGAAAAGCAG
TGCCATTACCAATTAATTCTTGCCAGGAGTGAGAGAGAGCTGCATCTTTAATTGAAACAT
ACTTAGTATTACTGGGTGTATAGAGTTCTTCCCTTTTTTTGTACTGGAAGATATTTCACT
CTGGTGACACTCTGGTACACTCTGGGGTTCTCGAATCTTGTCTGCTGTATAGTTTACTTT
TCCATATTGATTCCATGTATTTATGAGAAGATACTGTCTCCCATTTTATTACACATTTTA
AAGCCAACTAATGAAGGCAGCTGAGTCCCTCCAAAATTTTTCTTTTTAAATTTCTAATGA
ATTTGTCACACCGTACTGAAATACAGCAGCCCGTCACTGATGGGCTGATCTAGCAATGTT
AAGTATATTTACAGAATATGCAGTTACCTTTATTTATATATTTTGCAAGAAATCTTTTCT
GAATGATAAATGCATTTCAATTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-317, - strand, RNAz p=0.530854
               

               
               358-476, + strand, RNAz p=0.932408

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.530854
               

               
               358-476, + strand, RNAz p=0.932408

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004272, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004272, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr10 (4472479-4471747)
               

               
               1-744, gnl|Hg17|chr5 (78707378-78706649)
               

               
               1-744, gnl|Mm7|chr13 (90465353-90466073)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr10 (4472479-4471747)
               

               
               1-744, gnl|Hg17|chr5 (78707378-78706649)
               

               
               1-744, gnl|Mm7|chr13 (90465353-90466073)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ldo (0.0970026)

	198-317, - strand, RNAz p=0.530854
	358-476, + strand, RNAz p=0.932408

	1-744, gnl\|bosTau2\|chr10 (4472479-4471747)
	1-744, gnl\|Hg17\|chr5 (78707378-78706649)
	1-744, gnl\|Mm7\|chr13 (90465353-90466073)