Non-Coding RNA Search

Ss1.1-Pig3-SRG8016M19.5

Sequence:


               
               ATGAATTTGTCACACCGTACTGAAATACAGCAGCCCGTCACTGAGGGCTGATCTAGCAAT
GTTAAGTATATTTACAGAATATGCAGTTACCTTTATTTATATATTTTGCAAGAAATCTTT
TCTGAATGATAAATGCATTTCAATTTACAAATAATAATGGTTATTGGGGAACTGTTTATT
ATCGATCATTTTAAGGTGTATAGCTATTTTAAAGGGGACCCGTTTCCATCAAGCAGCCGA
TCAGAGGACTCTTGGGACTGGAGCCGTGTACTCTGTCTGGGTCTTCACATCAACCACGTC
TAGTCAAACCTCACAAGGCAATATTCTGAACTGTTAACTAGGCATTTCAAAACAGGAATG
CAGTTCAGTGGGCTCTTCTCAGTGAACAGGTTTTAATGTTGTTTTGATGTGATTTTACAG
GACTTTTAGCAAACATGCATTTCTTTATCTCTTTCTTTTAAGGAGCTATTTAAAAGTAAG
TCAAGTGCTGTCTAGTCTGCTTATGGAGTAGGAATTGCATCAGAGTCCATATATTCTTGC
TGTGCAATGCCTGTGATGTCGAGGAGGGTTCTTTTTTAAAGTGTATGCTTGAGTATCTGA
CTCCGTGGAGTCAAAAATGCACTGACTTTTTGTTTGTACCCCAAAACAATTGAATTGTTA
CGTACAAAATTAAGCTGATTAATCAATTTGTAACCATTTTTTCACTCACAGCTATTCAAC
ACTAGACAATTTTGTTTTATATATGTACATGTATGTATGTAGATACATACATATTAATTT
ATATTAGAGTGAAAAATAAATGGTTTGTTTCTAAAGTTAGTTTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAATTTGTCACACCGTACTGAAATACAGCAGCCCGTCACTGAGGGCTGATCTAGCAAT
GTTAAGTATATTTACAGAATATGCAGTTACCTTTATTTATATATTTTGCAAGAAATCTTT
TCTGAATGATAAATGCATTTCAATTTACAAATAATAATGGTTATTGGGGAACTGTTTATT
ATCGATCATTTTAAGGTGTATAGCTATTTTAAAGGGGACCCGTTTCCATCAAGCAGCCGA
TCAGAGGACTCTTGGGACTGGAGCCGTGTACTCTGTCTGGGTCTTCACATCAACCACGTC
TAGTCAAACCTCACAAGGCAATATTCTGAACTGTTAACTAGGCATTTCAAAACAGGAATG
CAGTTCAGTGGGCTCTTCTCAGTGAACAGGTTTTAATGTTGTTTTGATGTGATTTTACAG
GACTTTTAGCAAACATGCATTTCTTTATCTCTTTCTTTTAAGGAGCTATTTAAAAGTAAG
TCAAGTGCTGTCTAGTCTGCTTATGGAGTAGGAATTGCATCAGAGTCCATATATTCTTGC
TGTGCAATGCCTGTGATGTCGAGGAGGGTTCTTTTTTAAAGTGTATGCTTGAGTATCTGA
CTCCGTGGAGTCAAAAATGCACTGACTTTTTGTTTGTACCCCAAAACAATTGAATTGTTA
CGTACAAAATTAAGCTGATTAATCAATTTGTAACCATTTTTTCACTCACAGCTATTCAAC
ACTAGACAATTTTGTTTTATATATGTACATGTATGTATGTAGATACATACATATTAATTT
ATATTAGAGTGAAAAATAAATGGTTTGTTTCTAAAGTTAGTTTCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               563-678, - strand, RNAz p=0.545805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               563-678, - strand, RNAz p=0.545805

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr10 (4471894-4471060)
               

               
               1-828, gnl|Hg17|chr5 (78706796-78705934)
               

               
               1-828, gnl|Mm7|chr13 (90465924-90466728)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr10 (4471894-4471060)
               

               
               1-828, gnl|Hg17|chr5 (78706796-78705934)
               

               
               1-828, gnl|Mm7|chr13 (90465924-90466728)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	1-828, gnl\|bosTau2\|chr10 (4471894-4471060)
	1-828, gnl\|Hg17\|chr5 (78706796-78705934)
	1-828, gnl\|Mm7\|chr13 (90465924-90466728)

	sme (0.305437)
	bfe (0.299715)
	tbr (0.154178)
	isp (0.150376)
	ste (0.135208)
	ldo (0.0970026)