Ss1.1-Pig3-SRG8016N06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATGCATCAAGGCCTCAGAGTGCTCGACCCTCTGTTAGTGAAATACCAGAGAGAACTAT GTCAGTTAGTGATTTCAATTATTCACGGACTAGTCCTTCCAAAAGACCAAATGCAAGGGT GAACAACTAATTGATTACTTGATGCTGAAAGTGGCCCACCAGCCTCCATACACACAGCCC CATTGTTCTCCTAGACAAGGCCATGAACTGGCAAGGCAAGAGATTCGAGTGAGAGTTGAA AAGGACCCAGAACTTGGATTTAGCATATCAGGAGGTGTCGGTGGGAGAGGAAACCCATTC AGACCTGATGACGATGGTATATTTGTAACAAGGGTACAGCCTGAAGGACCAGCATCAAAA TTATTGCAACCAGGTGATAAAATTATTCAGGCTAATGGCTACAGTTTTATCAATATTGAA CATGGGCAAGCAGTGTCCTTGCTAAAAACTTTCCAGAACACAGTAGAACTCATTGTTCTA AGAGAGGTTTCCTCATAAGAACCATGGACTAAAAAAAACGGCTCTCAAGAGACAGCAAGA TTTATTGGAAGATTCTTGTGGGGGGAATTAATATTTTGGCTATTTTTATATATAAAGAAC TCAAAAAATTATGTTCAAATTTGTACATTAATGAAATAATGGAACTTGTGGTTAGAGGGA AAGAACCACTGTACAGTATATAGGGGAGACTCTTGAATTCATACCATATAAAACTTGTTG TTAGGTTTTTAAACATAGCAATCAAGGCTACAAAAACAAATGTATGTTGTTTTTGTATAG ATGGTAGGTTTATTTTTGGATTTCATACACATGATTGAACTCTGCAAGGCTCTAGTTAGC CTTGATTGTAGCCCAGAGACAGATGGCAGAGCTATCTATCTCATAGCTTTTATGCCCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATGCATCAAGGCCTCAGAGTGCTCGACCCTCTGTTAGTGAAATACCAGAGAGAACTAT GTCAGTTAGTGATTTCAATTATTCACGGACTAGTCCTTCCAAAAGACCAAATGCAAGGGT GAACAACTAATTGATTACTTGATGCTGAAAGTGGCCCACCAGCCTCCATACACACAGCCC CATTGTTCTCCTAGACAAGGCCATGAACTGGCAAGGCAAGAGATTCGAGTGAGAGTTGAA AAGGACCCAGAACTTGGATTTAGCATATCAGGAGGTGTCGGTGGGAGAGGAAACCCATTC AGACCTGATGACGATGGTATATTTGTAACAAGGGTACAGCCTGAAGGACCAGCATCAAAA TTATTGCAACCAGGTGATAAAATTATTCAGGCTAATGGCTACAGTTTTATCAATATTGAA CATGGGCAAGCAGTGTCCTTGCTAAAAACTTTCCAGAACACAGTAGAACTCATTGTTCTA AGAGAGGTTTCCTCATAAGAACCATGGACTAAAAAAAACGGCTCTCAAGAGACAGCAAGA TTTATTGGAAGATTCTTGTGGGGGGAATTAATATTTTGGCTATTTTTATATATAAAGAAC TCAAAAAATTATGTTCAAATTTGTACATTAATGAAATAATGGAACTTGTGGTTAGAGGGA AAGAACCACTGTACAGTATATAGGGGAGACTCTTGAATTCATACCATATAAAACTTGTTG TTAGGTTTTTAAACATAGCAATCAAGGCTACAAAAACAAATGTATGTTGTTTTTGTATAG ATGGTAGGTTTATTTTTGGATTTCATACACATGATTGAACTCTGCAAGGCTCTAGTTAGC CTTGATTGTAGCCCAGAGACAGATGGCAGAGCTATCTATCTCATAGCTTTTATGCCCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 588-703, - strand, RNAz p=0.736224 | |
| 743-898, + strand, RNAz p=0.992987 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 588-703, - strand, RNAz p=0.736224 | |
| 743-898, + strand, RNAz p=0.992987 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF276423, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 3-120, gnl|bosTau2|chr20 (8398448-8398331) | |
| 3-120, gnl|canFam2|chr2 (54587035-54587275) | |
| 3-120, gnl|danRer3|chr10 (985887-985635) | |
| 3-120, gnl|dasNov1|scaffold_2099 (40085-39842) | |
| 3-120, gnl|echTel1|scaffold_308928 (30759-31002) | |
| 3-120, gnl|fr1|chrUn (58450560-58450821) | |
| 3-120, gnl|galGal2|chrZ (4107014-4107257) | |
| 3-120, gnl|hg17|chr5 (65386228-65386471) | |
| 3-120, gnl|Hg17|chr5 (65386315-65386432) | |
| 3-120, gnl|mm7|chr13 (100971691-100971451) | |
| 3-120, gnl|Mm7|chr13 (100971605-100971488) | |
| 3-120, gnl|monDom2|scaffold_27 (31420397-31420640) | |
| 3-120, gnl|oryCun1|scaffold_181404 (4783-5026) | |
| 3-120, gnl|panTro1|chr4 (50548179-50547936) | |
| 3-120, gnl|rheMac2|chr6 (63957946-63958189) | |
| 3-120, gnl|tetNig1|chrUn_random (1957982-1957721) | |
| 3-120, gnl|xenTro1|scaffold_597 (4694-4451) | |
| 121-232, gnl|bosTau2|chr20 (8389025-8388914) | |
| 121-232, gnl|Hg17|chr5 (65406713-65406824) | |
| 121-232, gnl|Mm7|chr13 (100962708-100962597) | |
| 389-898, gnl|bosTau2|chr20 (8382029-8381521) | |
| 389-898, gnl|Hg17|chr5 (65410005-65410510) | |
| 389-898, gnl|Mm7|chr13 (100958695-100958189) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-120, gnl|bosTau2|chr20 (8398448-8398331) | |
| 3-120, gnl|canFam2|chr2 (54587035-54587275) | |
| 3-120, gnl|danRer3|chr10 (985887-985635) | |
| 3-120, gnl|dasNov1|scaffold_2099 (40085-39842) | |
| 3-120, gnl|echTel1|scaffold_308928 (30759-31002) | |
| 3-120, gnl|fr1|chrUn (58450560-58450821) | |
| 3-120, gnl|galGal2|chrZ (4107014-4107257) | |
| 3-120, gnl|hg17|chr5 (65386228-65386471) | |
| 3-120, gnl|Hg17|chr5 (65386315-65386432) | |
| 3-120, gnl|mm7|chr13 (100971691-100971451) | |
| 3-120, gnl|Mm7|chr13 (100971605-100971488) | |
| 3-120, gnl|monDom2|scaffold_27 (31420397-31420640) | |
| 3-120, gnl|oryCun1|scaffold_181404 (4783-5026) | |
| 3-120, gnl|panTro1|chr4 (50548179-50547936) | |
| 3-120, gnl|rheMac2|chr6 (63957946-63958189) | |
| 3-120, gnl|tetNig1|chrUn_random (1957982-1957721) | |
| 3-120, gnl|xenTro1|scaffold_597 (4694-4451) | |
| 121-232, gnl|bosTau2|chr20 (8389025-8388914) | |
| 121-232, gnl|Hg17|chr5 (65406713-65406824) | |
| 121-232, gnl|Mm7|chr13 (100962708-100962597) | |
| 389-898, gnl|bosTau2|chr20 (8382029-8381521) | |
| 389-898, gnl|Hg17|chr5 (65410005-65410510) | |
| 389-898, gnl|Mm7|chr13 (100958695-100958189) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) | |
| jej (0.0989218) |