Non-Coding RNA Search

Ss1.1-Pig3-SRG8016O06.3

Sequence:


               
               ATGAAGTTGCCCTTAACCACTAAGGATTATCAAGATTTTTGCACAAGCTCATACATGTCT
AGGATCCTTTATCAAGGCAGTTATGTTCATCACTCTTCTGCCTTTACTTCACCATCACCA
AATACTCAGTTAAATATAAATTAGCATTTTAAAAAATGACCACTCAACATAATGCTTAAG
GGATTTCCTCTCTGTGACAGAACCCAGGAACCAGTTCCTAGATGCATAATGTTGGCATAT
TGAAGATGAACTTAAAATTGTCCTTCAGTTTTGAGGCCATGTGTAAAGTTTAATCATATT
GTAAAATATCTATTCCGTATTAGAAATAGCTAGTTGACAGCTTATACTTCTCAAAACTCA
TGTTGTTATGTACACAAACTCAGTTTCTATATGTGAAGTTAGTGAGTCTTTTTGTGTTAC
TCCAAAATAAAGGCAATGATTTATTTTTTCCCAATGCCAATACAATTTGAGCTAATCACT
TAAGCTGGATACTTTACATTTCAATGCTGGAATCAGCAGTAGCCCTATGGGAAGTAAGAC
AAAGCATTGACTTTTAAATATAGACTTTTAAAACAAACTGTTGTTTTCTTTTGGAACTAT
AATTAGAATATACTCATCCACAAACCATTATTATGTGTACATTACTGTTGCAATTGTGAT
AATAGAGAATTTTATTTATTTTTATGCCAGCTTATATTGTGAAAACACATTTAGTCAATT
TGAGTTTTATCAATCCTGTTATGCTTGTCCTTGGAACATCTTTCGCGTATTCAAGGTTTG
TAGTTGAAAAGTTTACTGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAAGTTGCCCTTAACCACTAAGGATTATCAAGATTTTTGCACAAGCTCATACATGTCT
AGGATCCTTTATCAAGGCAGTTATGTTCATCACTCTTCTGCCTTTACTTCACCATCACCA
AATACTCAGTTAAATATAAATTAGCATTTTAAAAAATGACCACTCAACATAATGCTTAAG
GGATTTCCTCTCTGTGACAGAACCCAGGAACCAGTTCCTAGATGCATAATGTTGGCATAT
TGAAGATGAACTTAAAATTGTCCTTCAGTTTTGAGGCCATGTGTAAAGTTTAATCATATT
GTAAAATATCTATTCCGTATTAGAAATAGCTAGTTGACAGCTTATACTTCTCAAAACTCA
TGTTGTTATGTACACAAACTCAGTTTCTATATGTGAAGTTAGTGAGTCTTTTTGTGTTAC
TCCAAAATAAAGGCAATGATTTATTTTTTCCCAATGCCAATACAATTTGAGCTAATCACT
TAAGCTGGATACTTTACATTTCAATGCTGGAATCAGCAGTAGCCCTATGGGAAGTAAGAC
AAAGCATTGACTTTTAAATATAGACTTTTAAAACAAACTGTTGTTTTCTTTTGGAACTAT
AATTAGAATATACTCATCCACAAACCATTATTATGTGTACATTACTGTTGCAATTGTGAT
AATAGAGAATTTTATTTATTTTTATGCCAGCTTATATTGTGAAAACACATTTAGTCAATT
TGAGTTTTATCAATCCTGTTATGCTTGTCCTTGGAACATCTTTCGCGTATTCAAGGTTTG
TAGTTGAAAAGTTTACTGTAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr21 (18099650-18100460)
               

               
               1-804, gnl|Hg17|chr15 (81598799-81597987)
               

               
               1-804, gnl|Mm7|chr7 (77759144-77758364)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr21 (18099650-18100460)
               

               
               1-804, gnl|Hg17|chr15 (81598799-81597987)
               

               
               1-804, gnl|Mm7|chr7 (77759144-77758364)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fco (0.78604)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-804, gnl\|bosTau2\|chr21 (18099650-18100460)
	1-804, gnl\|Hg17\|chr15 (81598799-81597987)
	1-804, gnl\|Mm7\|chr7 (77759144-77758364)

	fco (0.78604)
	kid (0.259471)
	ret (0.257467)
	tes (0.207814)
	fbs (0.175346)
	spl (0.143184)
	nca (0.136874)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)