Non-Coding RNA Search

Ss1.1-Pig3-SRG8016P05.5

Sequence:


               
               CGCAGGGGATGTGCACCCCCACTGGGCAGCGTGATGCTTCTGTTAAACCATACTCTTCAT
GCAGTGGCTGATGGAGGGCATATGCCTGCCTGGGTCATGACCGAACACAGACACACACTA
TGTATGTCAGAGAAGCTCCGGACCACACCCCCAAGCACGGTACCGTCTGCTTCATCTGGT
GGACGGCACACATACACACACACACACACACGGGAATGAAAACTACACCTATAGAAAATT
GAGTATGTATTGTAGAAATGTAGAGGAAAATAAAAATTTTTTTCAGATGTAATTACTTTT
AATATATGCTTGTGGAAGGTCTAATATGATGTATGCTGTCTCTGTAATTTTTGCTGTAAA
TAACTGGAGACAGTGAATACACTGATTTTTCTATGTCTCTGTTTAAGCATAAGACTTTGT
AATGATTTTTTTAGAGGGGGAAAAACCAACAAAGAGCAAATATGTACTTGCTTCCTTTCT
GCGTGTTACGTACTTCTCAGAAACTGGTTGTAATGGTTTAAGCATCTTGATGGGTCATTG
GTGTTAAGTGTACGCTTCCTTTTGTAAGACAGCTGAGAAAGGGACAGGGCTGTCAATTAA
ATCTGCTCCAAAGAATCTGTATTGAAGATTTCCCTAAGACCTGTAAACTCTATATGAACC
AGACATGAAAAAGGAAAGTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGGGGATGTGCACCCCCACTGGGCAGCGTGATGCTTCTGTTAAACCATACTCTTCAT
GCAGTGGCTGATGGAGGGCATATGCCTGCCTGGGTCATGACCGAACACAGACACACACTA
TGTATGTCAGAGAAGCTCCGGACCACACCCCCAAGCACGGTACCGTCTGCTTCATCTGGT
GGACGGCACACATACACACACACACACACACGGGAATGAAAACTACACCTATAGAAAATT
GAGTATGTATTGTAGAAATGTAGAGGAAAATAAAAATTTTTTTCAGATGTAATTACTTTT
AATATATGCTTGTGGAAGGTCTAATATGATGTATGCTGTCTCTGTAATTTTTGCTGTAAA
TAACTGGAGACAGTGAATACACTGATTTTTCTATGTCTCTGTTTAAGCATAAGACTTTGT
AATGATTTTTTTAGAGGGGGAAAAACCAACAAAGAGCAAATATGTACTTGCTTCCTTTCT
GCGTGTTACGTACTTCTCAGAAACTGGTTGTAATGGTTTAAGCATCTTGATGGGTCATTG
GTGTTAAGTGTACGCTTCCTTTTGTAAGACAGCTGAGAAAGGGACAGGGCTGTCAATTAA
ATCTGCTCCAAAGAATCTGTATTGAAGATTTCCCTAAGACCTGTAAACTCTATATGAACC
AGACATGAAAAAGGAAAGTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-433, + strand, RNAz p=0.66523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-433, + strand, RNAz p=0.66523

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr8 (23989952-23990633)
               

               
               1-684, gnl|Hg17|chr9 (74535748-74536425)
               

               
               1-684, gnl|Mm7|chr19 (18633452-18632785)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr8 (23989952-23990633)
               

               
               1-684, gnl|Hg17|chr9 (74535748-74536425)
               

               
               1-684, gnl|Mm7|chr19 (18633452-18632785)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-684, gnl\|bosTau2\|chr8 (23989952-23990633)
	1-684, gnl\|Hg17\|chr9 (74535748-74536425)
	1-684, gnl\|Mm7\|chr19 (18633452-18632785)