Non-Coding RNA Search

Ss1.1-Pig3-SRG8017A13.3

Sequence:


               
               ACAGCTTCTGGTCAGGCGCGGAAATATGTGAATGCCTTCTCAACCCGGACTCTGGTCATG
TGAGATGTTTGCAGATAAGCATTATGGTTTTCAGAACACTTCAAGTTGACTTGGGATATA
GCATTCCTCGACGTGAAACTTTTCATGAATGGGAGAAGAGCCTATTTTTGTTGTGGTACA
ACAGTTGAGAGCAGCACCAAGTGCATTTAGGTGGATGAAATCATATCAGATTTCACCCAA
CTAAAAGGATTTTTTAAAGTAATAAATAACAGTCTTACCTAAATTATTAGGTAATGAATT
GTAGTCAGTTGTTAATATCTTAATGCAGATTTTTTTTTAAAAAAGCATAAAATGATTTAT
CTATATTTTAGAGGATCCAACAGATCAGTATTTTTTTTTCCTGTGATGAGGTTTTTGAAA
TTTTACACAAAAAAGGTACTCCAATATTTCGCTTTTCTCAATCACTAAACACAATGCATT
ACTATAAACGTTGGCTTACTACCACAGAATAAGTAATCAATATTGTAAATGCTCATTTAT
GGTTAGTAACCTTGGAGGTACATTTATTGTACTAAACCATTTTATGAGGGTTTTTTTGTT
AGCTTGCTTAAAAAAATTATTACTGTATGAAATAGTTTTATAAAAAATTATATTTTTATT
CAGTAATTTAATTTTGTAAATGCCAAATGAAAAAAAAAATGTGTTTTGCTGCTATGGTCT
TAGCCTGTAGACATGCTGCTAGTATCAGAGGGACAGTAGAGCTTTGAATGAACAGAAAAG
AAACTCGGTGTTAGGTAATTGACTATGCACTAGTATTTCAAACTTTTTTATTTTTTATAT
ATATATATACTTTTTTTTTCCTTTTGTAATACATTGGAAAACTTGTTTGGGAGATTTTGC
ATTTGTTGTTGTTCTTTGTTTTATTTTTTGTTATTGTTGGTTTATAAGAGCATGCATTGC
ACTTCTTTTTTGGGAGATCTATGTTGTTGGTGTCCTGTGTTTTGTTTTGAGTTCAGCCTG
ACTGTTCTTTAATTCAGGGGTTGTGTGTTTAATCAGCATTCCCCATGGTCTCTAAGCATA
TGGTCTCAGAACTGCTGCACAGAACCTGTGTTTGCAGCTGGGGGTCAAGAGATGGGGGTC
AAGAGATTGGGGTCCATAGCCAGTTGCTGCCTTAAGAATCCTTGGTGCAAGATGGCCAGC
ACTGAACTTTTGATATGACAGTGTACTTACTGCCTTGTAGTAAAATAAAGCTGTGCCCTA
TTTTGCTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCTTCTGGTCAGGCGCGGAAATATGTGAATGCCTTCTCAACCCGGACTCTGGTCATG
TGAGATGTTTGCAGATAAGCATTATGGTTTTCAGAACACTTCAAGTTGACTTGGGATATA
GCATTCCTCGACGTGAAACTTTTCATGAATGGGAGAAGAGCCTATTTTTGTTGTGGTACA
ACAGTTGAGAGCAGCACCAAGTGCATTTAGGTGGATGAAATCATATCAGATTTCACCCAA
CTAAAAGGATTTTTTAAAGTAATAAATAACAGTCTTACCTAAATTATTAGGTAATGAATT
GTAGTCAGTTGTTAATATCTTAATGCAGATTTTTTTTTAAAAAAGCATAAAATGATTTAT
CTATATTTTAGAGGATCCAACAGATCAGTATTTTTTTTTCCTGTGATGAGGTTTTTGAAA
TTTTACACAAAAAAGGTACTCCAATATTTCGCTTTTCTCAATCACTAAACACAATGCATT
ACTATAAACGTTGGCTTACTACCACAGAATAAGTAATCAATATTGTAAATGCTCATTTAT
GGTTAGTAACCTTGGAGGTACATTTATTGTACTAAACCATTTTATGAGGGTTTTTTTGTT
AGCTTGCTTAAAAAAATTATTACTGTATGAAATAGTTTTATAAAAAATTATATTTTTATT
CAGTAATTTAATTTTGTAAATGCCAAATGAAAAAAAAAATGTGTTTTGCTGCTATGGTCT
TAGCCTGTAGACATGCTGCTAGTATCAGAGGGACAGTAGAGCTTTGAATGAACAGAAAAG
AAACTCGGTGTTAGGTAATTGACTATGCACTAGTATTTCAAACTTTTTTATTTTTTATAT
ATATATATACTTTTTTTTTCCTTTTGTAATACATTGGAAAACTTGTTTGGGAGATTTTGC
ATTTGTTGTTGTTCTTTGTTTTATTTTTTGTTATTGTTGGTTTATAAGAGCATGCATTGC
ACTTCTTTTTTGGGAGATCTATGTTGTTGGTGTCCTGTGTTTTGTTTTGAGTTCAGCCTG
ACTGTTCTTTAATTCAGGGGTTGTGTGTTTAATCAGCATTCCCCATGGTCTCTAAGCATA
TGGTCTCAGAACTGCTGCACAGAACCTGTGTTTGCAGCTGGGGGTCAAGAGATGGGGGTC
AAGAGATTGGGGTCCATAGCCAGTTGCTGCCTTAAGAATCCTTGGTGCAAGATGGCCAGC
ACTGAACTTTTGATATGACAGTGTACTTACTGCCTTGTAGTAAAATAAAGCTGTGCCCTA
TTTTGCTTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-303, + strand, RNAz p=0.999654

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-303, + strand, RNAz p=0.999654

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               122-303, BP424712 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP424712.1|), blast E-value=0, identity=92.31% 
               

               
               125-303, MLN1_1_H10.g1_A009 Mesenteric lymph node (MLN1) Equus caballus 
(gb|BM780879.1|), blast E-value=0, identity=93.33% 
               

               
               125-303, MLN1_6_C02.g1_A009 Mesenteric lymph node (MLN1) Equus caballus 
(gb|BM781283.1|), blast E-value=0, identity=93.33% 
               

               
               122-303, AGENCOURT_7604963 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ220472.1|), blast E-value=0, identity=92.31% 
               

               
               122-303, ILLUMIGEN_MCQ_39292 Katze_MMPB2 Macaca mulatta cDNA clone 
(gb|CO646534.1|), blast E-value=0, identity=92.31% 
               

               
               122-303, MCF7RNAL22A05TF Human MCF7 breast cancer cell line near full length 
(gb|DN916613.1|), blast E-value=0, identity=92.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               122-303, BP424712 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP424712.1|), blast E-value=0, identity=92.31% 
               

               
               125-303, MLN1_1_H10.g1_A009 Mesenteric lymph node (MLN1) Equus caballus 
(gb|BM780879.1|), blast E-value=0, identity=93.33% 
               

               
               125-303, MLN1_6_C02.g1_A009 Mesenteric lymph node (MLN1) Equus caballus 
(gb|BM781283.1|), blast E-value=0, identity=93.33% 
               

               
               122-303, AGENCOURT_7604963 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ220472.1|), blast E-value=0, identity=92.31% 
               

               
               122-303, ILLUMIGEN_MCQ_39292 Katze_MMPB2 Macaca mulatta cDNA clone 
(gb|CO646534.1|), blast E-value=0, identity=92.31% 
               

               
               122-303, MCF7RNAL22A05TF Human MCF7 breast cancer cell line near full length 
(gb|DN916613.1|), blast E-value=0, identity=92.31%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AJ606324, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AJ606324, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1121, gnl|bosTau2|chr9 (43061029-43059881)
               

               
               1-1121, gnl|Hg17|chr6 (135580749-135581866)
               

               
               1-1121, gnl|Mm7|chr10 (20852290-20851106)
               


               
               1148-1269, gnl|bosTau2|chr9 (43059883-43059761)
               

               
               1148-1269, gnl|Hg17|chr6 (135581864-135582003)
               

               
               1148-1269, gnl|Mm7|chr10 (20851111-20850990)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1121, gnl|bosTau2|chr9 (43061029-43059881)
               

               
               1-1121, gnl|Hg17|chr6 (135580749-135581866)
               

               
               1-1121, gnl|Mm7|chr10 (20852290-20851106)
               


               
               1148-1269, gnl|bosTau2|chr9 (43059883-43059761)
               

               
               1148-1269, gnl|Hg17|chr6 (135581864-135582003)
               

               
               1148-1269, gnl|Mm7|chr10 (20851111-20850990)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               med (0.465008)
               

               
               fty (0.351679)
               

               
               ece (0.229305)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.465008)
               

               
               fty (0.351679)
               

               
               ece (0.229305)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

	122-303, BP424712 Homo sapiens small intestine Homo sapiens cDNA clone (dbj\|BP424712.1\|), blast E-value=0, identity=92.31%
	125-303, MLN1_1_H10.g1_A009 Mesenteric lymph node (MLN1) Equus caballus (gb\|BM780879.1\|), blast E-value=0, identity=93.33%
	125-303, MLN1_6_C02.g1_A009 Mesenteric lymph node (MLN1) Equus caballus (gb\|BM781283.1\|), blast E-value=0, identity=93.33%
	122-303, AGENCOURT_7604963 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BQ220472.1\|), blast E-value=0, identity=92.31%
	122-303, ILLUMIGEN_MCQ_39292 Katze_MMPB2 Macaca mulatta cDNA clone (gb\|CO646534.1\|), blast E-value=0, identity=92.31%
	122-303, MCF7RNAL22A05TF Human MCF7 breast cancer cell line near full length (gb\|DN916613.1\|), blast E-value=0, identity=92.31%

	1-1121, gnl\|bosTau2\|chr9 (43061029-43059881)
	1-1121, gnl\|Hg17\|chr6 (135580749-135581866)
	1-1121, gnl\|Mm7\|chr10 (20852290-20851106)

	1148-1269, gnl\|bosTau2\|chr9 (43059883-43059761)
	1148-1269, gnl\|Hg17\|chr6 (135581864-135582003)
	1148-1269, gnl\|Mm7\|chr10 (20851111-20850990)

	med (0.465008)
	fty (0.351679)
	ece (0.229305)
	spl (0.143184)
	thg (0.126791)