Non-Coding RNA Search

Ss1.1-Pig3-SRG8017A17.3

Sequence:


               
               GGGAGACACATAGGTGCAGACCCCTGGCCGTCTTGGCCAGGGCTGTGTCTTGATCTCTGG
ACGATTAATAGTTCCAGAAAAACAAAGAGCCAGAGGCTCGGTAAAGACAGTTGATTTAGG
AGGCTGCCCTTCTCGGGGAGCAGGGGCTCCCTGGTAGCCTCTTCACCCCCATCAAGCAGT
CCTTCATTAAGAGGGGCTTATGCATCCTCTATTCAGAGGCACTTTGGGGCACAAGTGTCC
CCCCCTGTCCAGCTAGACAACTGGGCAGCACTCTAATAGGCCTTGGGAAGTTGGGGCAAA
CCGAGGCCAGGCAAGGACATAAGCTGGTGGCGGAATGGGCTCCCTCCCCAGTGTTTATAC
TGTAACTGTGTAACATTTTGTATATTCTGGAGGTAGAGCAGCCCCCTGTATCACAGGGGA
GGTCAGAGCTGGTAAATGGGGAGGAGTTTCCATTGAATATCTGGGGCTGGGGAAACTTAT
TTATTGATAACGTAGGATGGAGAGGAGGTGGAGGCGGGGACGGGTTTGTGCCCGGGTGAG
TCGACTCCTGTTTCATTTCACTTTTTATTTCAGAATAAATGGATTTAGCCATAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGACACATAGGTGCAGACCCCTGGCCGTCTTGGCCAGGGCTGTGTCTTGATCTCTGG
ACGATTAATAGTTCCAGAAAAACAAAGAGCCAGAGGCTCGGTAAAGACAGTTGATTTAGG
AGGCTGCCCTTCTCGGGGAGCAGGGGCTCCCTGGTAGCCTCTTCACCCCCATCAAGCAGT
CCTTCATTAAGAGGGGCTTATGCATCCTCTATTCAGAGGCACTTTGGGGCACAAGTGTCC
CCCCCTGTCCAGCTAGACAACTGGGCAGCACTCTAATAGGCCTTGGGAAGTTGGGGCAAA
CCGAGGCCAGGCAAGGACATAAGCTGGTGGCGGAATGGGCTCCCTCCCCAGTGTTTATAC
TGTAACTGTGTAACATTTTGTATATTCTGGAGGTAGAGCAGCCCCCTGTATCACAGGGGA
GGTCAGAGCTGGTAAATGGGGAGGAGTTTCCATTGAATATCTGGGGCTGGGGAAACTTAT
TTATTGATAACGTAGGATGGAGAGGAGGTGGAGGCGGGGACGGGTTTGTGCCCGGGTGAG
TCGACTCCTGTTTCATTTCACTTTTTATTTCAGAATAAATGGATTTAGCCATAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-314, + strand, RNAz p=0.999238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-314, + strand, RNAz p=0.999238

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               45-314, POSM0100005_D01 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190140.1|), blast E-value=0, identity=93.04% 
               

               
               1-230, LB01623.CR_L23 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814234.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, LB01627.CR_G24 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT815502.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, 1477330 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894666.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, 1480690 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901462.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, LB02718.CR_C17 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV890775.1|), 
blast E-value=0, identity=88.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               45-314, POSM0100005_D01 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190140.1|), blast E-value=0, identity=93.04% 
               

               
               1-230, LB01623.CR_L23 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814234.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, LB01627.CR_G24 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT815502.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, 1477330 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894666.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, 1480690 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901462.1|), 
blast E-value=0, identity=88.31% 
               

               
               1-230, LB02718.CR_C17 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV890775.1|), 
blast E-value=0, identity=88.31%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX647920, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX647920, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-593, gnl|bosTau2|chr11 (78150649-78150056)
               

               
               1-593, gnl|Hg17|chr9 (128098171-128097662)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-593, gnl|bosTau2|chr11 (78150649-78150056)
               

               
               1-593, gnl|Hg17|chr9 (128098171-128097662)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)

	45-314, POSM0100005_D01 porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM190140.1\|), blast E-value=0, identity=93.04%
	1-230, LB01623.CR_L23 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT814234.1\|), blast E-value=0, identity=88.31%
	1-230, LB01627.CR_G24 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT815502.1\|), blast E-value=0, identity=88.31%
	1-230, 1477330 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT894666.1\|), blast E-value=0, identity=88.31%
	1-230, 1480690 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT901462.1\|), blast E-value=0, identity=88.31%
	1-230, LB02718.CR_C17 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV890775.1\|), blast E-value=0, identity=88.31%

	1-593, gnl\|bosTau2\|chr11 (78150649-78150056)
	1-593, gnl\|Hg17\|chr9 (128098171-128097662)

	fcc (0.197785)
	nep (0.183925)
	ton (0.1755)
	cje (0.165235)
	cag (0.151194)
	pgl (0.118483)