Non-Coding RNA Search

Ss1.1-Pig3-SRG8017B08.3

Sequence:


               
               GAGAAGCCGTACGCCTGTGCCAAGTGCGGGGACCGCTTCAGGCAGAGCTCCAACCTCATC
CGGCATCAGAGGATCCACCAGGGAGAGACACACTTCACGTGTGACGAATGTGGGGAAACC
TGCCGTGTCTCCCACCGGGCGAGACATGAGCGGACACACAAGGGGGAGAGGCCCTTCGTG
TGCGACGCGTGTGCCAAGAGCTTCAAACGCTGCTCCGACCTCTCCAAGCACCAGAGGACC
CACACCGGGGAGAAGCCCTACGGGTGCCCGGCGTGCGGGAAGGCCTTCAGCCAGAGTGCC
ACCCTGGTCAAACACCAGAGGACACACACCGGCGAGAAGCCGTACACCTGTCCCAAGTGC
GGGGACCGCTTCAGGCAGAGCTCACACCTCAGTCGGCATCAGAGGATCCACCAGGGAGAG
AGCAACTACACGTGTGACGAATGTGGGGAAACCTGCCGTGTCGCCAGTCGGCTTAGACAC
CAGAGGACACACAAGGGCGAGAGGCCCTACGTGTGTGACGCGTGTGCGAAGAGCTTCAAA
CGGTGCTCCGACCTGTCCAAGCACCAGAGGACCCACACCGGGGAGAAGCCCTACGGGTGC
TTCGTCTGTGGGAGGCGCTTCAGCCAGAGCGCCACCCTCGTCAAACACCAGAGGACTCAC
ACTGGCGAGAAACCTTACAGATGCCTTGAGTGTGGGGACAGCTTTAGGCAGAGCTCACAC
CTTCTCCGACACCAAAGGACCCACAGAAATAAAGTCCCATCATTCTGACATGCTTCTGCC
TGAGCGGTTTTGTTTCCCTCCCTCTCTCTCTTTCCAGGAACCGCATCCTTTGGCTTTTGC
GCCATTTCCGTGATCATGGATCGTGTCACCTTGGGCCTCACGCCCAGGACAGACGGAGTC
CAGCTGGCGTCTCAGGATGGGCTTTGAGCACATATTGCCCCAAAGGAGGACTGCGTGAGG
TGGGATCCCTGCCTGAAGAGACTTCTGGGGAGGGCTGACGTGTGACAGTTCTGTCCTTGT
CTCCACTCCTCTGGAACTTCTGCTTTGGGGCCCCCTCTTGCCCACTCCAGTTACTTCCCC
GAGCATGTATCCACTCGCTTAGATGGTAAATATTTCATAGCCCAAAGTTAAGTACCTAGA
AGAGACATTCTATATTCTTGACCTTTTAAACAATTAAATTTGCAGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGCCGTACGCCTGTGCCAAGTGCGGGGACCGCTTCAGGCAGAGCTCCAACCTCATC
CGGCATCAGAGGATCCACCAGGGAGAGACACACTTCACGTGTGACGAATGTGGGGAAACC
TGCCGTGTCTCCCACCGGGCGAGACATGAGCGGACACACAAGGGGGAGAGGCCCTTCGTG
TGCGACGCGTGTGCCAAGAGCTTCAAACGCTGCTCCGACCTCTCCAAGCACCAGAGGACC
CACACCGGGGAGAAGCCCTACGGGTGCCCGGCGTGCGGGAAGGCCTTCAGCCAGAGTGCC
ACCCTGGTCAAACACCAGAGGACACACACCGGCGAGAAGCCGTACACCTGTCCCAAGTGC
GGGGACCGCTTCAGGCAGAGCTCACACCTCAGTCGGCATCAGAGGATCCACCAGGGAGAG
AGCAACTACACGTGTGACGAATGTGGGGAAACCTGCCGTGTCGCCAGTCGGCTTAGACAC
CAGAGGACACACAAGGGCGAGAGGCCCTACGTGTGTGACGCGTGTGCGAAGAGCTTCAAA
CGGTGCTCCGACCTGTCCAAGCACCAGAGGACCCACACCGGGGAGAAGCCCTACGGGTGC
TTCGTCTGTGGGAGGCGCTTCAGCCAGAGCGCCACCCTCGTCAAACACCAGAGGACTCAC
ACTGGCGAGAAACCTTACAGATGCCTTGAGTGTGGGGACAGCTTTAGGCAGAGCTCACAC
CTTCTCCGACACCAAAGGACCCACAGAAATAAAGTCCCATCATTCTGACATGCTTCTGCC
TGAGCGGTTTTGTTTCCCTCCCTCTCTCTCTTTCCAGGAACCGCATCCTTTGGCTTTTGC
GCCATTTCCGTGATCATGGATCGTGTCACCTTGGGCCTCACGCCCAGGACAGACGGAGTC
CAGCTGGCGTCTCAGGATGGGCTTTGAGCACATATTGCCCCAAAGGAGGACTGCGTGAGG
TGGGATCCCTGCCTGAAGAGACTTCTGGGGAGGGCTGACGTGTGACAGTTCTGTCCTTGT
CTCCACTCCTCTGGAACTTCTGCTTTGGGGCCCCCTCTTGCCCACTCCAGTTACTTCCCC
GAGCATGTATCCACTCGCTTAGATGGTAAATATTTCATAGCCCAAAGTTAAGTACCTAGA
AGAGACATTCTATATTCTTGACCTTTTAAACAATTAAATTTGCAGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864877|ref|XP_601124.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864877|ref|XP_601124.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-743, gnl|bosTau2|chr10 (8996762-8996014)
               

               
               1-743, gnl|Hg17|chr19 (42818567-42817755)
               

               
               1-743, gnl|Mm7|chr2 (127310193-127309529)
               


               
               63-717, gnl|bosTau2|chr10 (8996784-8996124)
               

               
               63-717, gnl|Hg17|chr19 (42818589-42817845)
               

               
               63-717, gnl|Mm7|chr2 (127310215-127309639)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-743, gnl|bosTau2|chr10 (8996762-8996014)
               

               
               1-743, gnl|Hg17|chr19 (42818567-42817755)
               

               
               1-743, gnl|Mm7|chr2 (127310193-127309529)
               


               
               63-717, gnl|bosTau2|chr10 (8996784-8996124)
               

               
               63-717, gnl|Hg17|chr19 (42818589-42817845)
               

               
               63-717, gnl|Mm7|chr2 (127310215-127309639)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)

	1-743, gnl\|bosTau2\|chr10 (8996762-8996014)
	1-743, gnl\|Hg17\|chr19 (42818567-42817755)
	1-743, gnl\|Mm7\|chr2 (127310193-127309529)

	63-717, gnl\|bosTau2\|chr10 (8996784-8996124)
	63-717, gnl\|Hg17\|chr19 (42818589-42817845)
	63-717, gnl\|Mm7\|chr2 (127310215-127309639)