Ss1.1-Pig3-SRG8017C01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGTGGTTACAGAATACTAAAACCTAGAATTAACTTTGTAATCATTCTAATATTGTATT TACTGCTGTAACAGATGAATACTGTCTTTTTACAGGAACCTTAATGAATGTGTAGAATGA TTAAGTGAAAAACTTTCCTAAAAACAAACCTCTGAGTTTTTGGGAGAAATTTAAGTATGA CCTGTTTTTTGGGGTTTTTTGTTTTGTTTCTGTTTTCCTTTTAGGACAACCTCTCTCTTT GCAAAAATTTAAGTGTTTTATATTTGTATGATAACCGTATTAGTCAAATCACTAACCTGA ATTATGCCACAAACTTGACCCACTTATATCTACAAAACAATTGTATTTCATCTATGGAGA ACCTCAGATCATTAAAGAAACTGGTTTGCAGATATCTGGGGGGCAATTACATTGCTGTCA TAGAAGGCTTAGAAGGATTAGAAGGACTAAGAGAGCTTCATGTTGAGAGTCAGAGGCTTC CCCCTGGAGAAAAGCTCCTGTTTGATCCAAGAACTCTTCATTCTCTGGCAGTAAGGCCAC ATTAGAGTACTCTAACAAAAAATACAGTGATTCATATTCATAATGAAAAAAGTGGTGAAG GTATATTTGGATGTTGTACTTATTCTGCATGTTTATATGGTCAGTTAAGAACTTGAGAGC TAAAACTAATTTTTCCTACATATTTTCTCAGACAGCAGCTATAAAGTGGGAATGATAATG CCTGCCTCTAGGGTAACTGGAAGGATCAAAAGAAGAATGTGGAAAGGTTATATAAAGCAT GAGGTTCTAATACAGATGTTAACTCATTCATATTTTGACCTTGGTGTGGTTATCATGACT CAAACTTTATAAACTTTTTGGGGGAAAAAAAACTAAGGAAAGAGGAATGCAAGATTATTT GGAAAATCTGAGCAACTTGGAGAACCTTTATAATGATAAGTCATTTTCTCACTGGATTCT GATTTGATTGTAGGTTGCACTGCATAGAGCTCTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGTGGTTACAGAATACTAAAACCTAGAATTAACTTTGTAATCATTCTAATATTGTATT TACTGCTGTAACAGATGAATACTGTCTTTTTACAGGAACCTTAATGAATGTGTAGAATGA TTAAGTGAAAAACTTTCCTAAAAACAAACCTCTGAGTTTTTGGGAGAAATTTAAGTATGA CCTGTTTTTTGGGGTTTTTTGTTTTGTTTCTGTTTTCCTTTTAGGACAACCTCTCTCTTT GCAAAAATTTAAGTGTTTTATATTTGTATGATAACCGTATTAGTCAAATCACTAACCTGA ATTATGCCACAAACTTGACCCACTTATATCTACAAAACAATTGTATTTCATCTATGGAGA ACCTCAGATCATTAAAGAAACTGGTTTGCAGATATCTGGGGGGCAATTACATTGCTGTCA TAGAAGGCTTAGAAGGATTAGAAGGACTAAGAGAGCTTCATGTTGAGAGTCAGAGGCTTC CCCCTGGAGAAAAGCTCCTGTTTGATCCAAGAACTCTTCATTCTCTGGCAGTAAGGCCAC ATTAGAGTACTCTAACAAAAAATACAGTGATTCATATTCATAATGAAAAAAGTGGTGAAG GTATATTTGGATGTTGTACTTATTCTGCATGTTTATATGGTCAGTTAAGAACTTGAGAGC TAAAACTAATTTTTCCTACATATTTTCTCAGACAGCAGCTATAAAGTGGGAATGATAATG CCTGCCTCTAGGGTAACTGGAAGGATCAAAAGAAGAATGTGGAAAGGTTATATAAAGCAT GAGGTTCTAATACAGATGTTAACTCATTCATATTTTGACCTTGGTGTGGTTATCATGACT CAAACTTTATAAACTTTTTGGGGGAAAAAAAACTAAGGAAAGAGGAATGCAAGATTATTT GGAAAATCTGAGCAACTTGGAGAACCTTTATAATGATAAGTCATTTTCTCACTGGATTCT GATTTGATTGTAGGTTGCACTGCATAGAGCTCTGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 464-582, + strand, RNAz p=0.541894 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 464-582, + strand, RNAz p=0.541894 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-189, gnl|bosTau2|chr14 (18111701-18111892) | |
| 1-189, gnl|Hg17|chr8 (68089601-68089395) | |
| 1-189, gnl|Mm7|chr1 (10143066-10142880) | |
| 200-384, gnl|bosTau2|chr14 (18111881-18112065) | |
| 200-384, gnl|canFam2|chr29 (19541562-19541781) | |
| 200-384, gnl|danRer3|chr24 (21280423-21280213) | |
| 200-384, gnl|dasNov1|scaffold_22451 (45930-46147) | |
| 200-384, gnl|echTel1|scaffold_95862 (4893-4673) | |
| 200-384, gnl|fr1|chrUn (87695147-87694929) | |
| 200-384, gnl|galGal2|chr2 (114789449-114789680) | |
| 200-384, gnl|hg17|chr8 (68089187-68089406) | |
| 200-384, gnl|Hg17|chr8 (68089406-68089222) | |
| 200-384, gnl|mm7|chr1 (10142671-10142890) | |
| 200-384, gnl|Mm7|chr1 (10142890-10142707) | |
| 200-384, gnl|monDom2|scaffold_4 (94479055-94478836) | |
| 200-384, gnl|oryCun1|scaffold_167852 (4656-4437) | |
| 200-384, gnl|panTro1|chr7 (70112936-70113157) | |
| 200-384, gnl|rheMac2|chr8 (69640957-69641176) | |
| 200-384, gnl|rn3|chr5 (8782056-8781836) | |
| 200-384, gnl|tetNig1|chr6 (2469027-2468831) | |
| 200-384, gnl|xenTro1|scaffold_109 (281111-281329) | |
| 385-686, gnl|bosTau2|chr14 (18113295-18113604) | |
| 385-686, gnl|Hg17|chr8 (68087892-68087581) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-189, gnl|bosTau2|chr14 (18111701-18111892) | |
| 1-189, gnl|Hg17|chr8 (68089601-68089395) | |
| 1-189, gnl|Mm7|chr1 (10143066-10142880) | |
| 200-384, gnl|bosTau2|chr14 (18111881-18112065) | |
| 200-384, gnl|canFam2|chr29 (19541562-19541781) | |
| 200-384, gnl|danRer3|chr24 (21280423-21280213) | |
| 200-384, gnl|dasNov1|scaffold_22451 (45930-46147) | |
| 200-384, gnl|echTel1|scaffold_95862 (4893-4673) | |
| 200-384, gnl|fr1|chrUn (87695147-87694929) | |
| 200-384, gnl|galGal2|chr2 (114789449-114789680) | |
| 200-384, gnl|hg17|chr8 (68089187-68089406) | |
| 200-384, gnl|Hg17|chr8 (68089406-68089222) | |
| 200-384, gnl|mm7|chr1 (10142671-10142890) | |
| 200-384, gnl|Mm7|chr1 (10142890-10142707) | |
| 200-384, gnl|monDom2|scaffold_4 (94479055-94478836) | |
| 200-384, gnl|oryCun1|scaffold_167852 (4656-4437) | |
| 200-384, gnl|panTro1|chr7 (70112936-70113157) | |
| 200-384, gnl|rheMac2|chr8 (69640957-69641176) | |
| 200-384, gnl|rn3|chr5 (8782056-8781836) | |
| 200-384, gnl|tetNig1|chr6 (2469027-2468831) | |
| 200-384, gnl|xenTro1|scaffold_109 (281111-281329) | |
| 385-686, gnl|bosTau2|chr14 (18113295-18113604) | |
| 385-686, gnl|Hg17|chr8 (68087892-68087581) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |