Non-Coding RNA Search

Ss1.1-Pig3-SRG8017C19.5

Sequence:


               
               CTTTTAGTGGAACTTCTCAGAATTTGAAATACAGCAGTGTATGCCATATGCGATGTCAGG
ATTCCTCAACTTAAACCCTATTGGGCATTAAATATAAATTCCCCTGAAAGGGAATAGTTT
TTGTGGTTTTCATCTGTCTTCATAATTCCGGATGAAAGTGTGTTGTAGAATTTGGGGCCA
GGCAATCGGAAGGAATTAGACTGAAAAATTTTTTTCAGAAGCATTTATTTCCTATTTTTC
AGAGTCAAACTGTCAAATTGAGTCTTTGATCTAACTTAATTCTGGGTTTCATTTTCGTTC
TCTTAATAGAGATACAAAAGACCTGTCTTCTGAGGGCAAGTATATTCTTAATGGGTCAGA
GCTACTTTAACATTCATTCATTCCCTTTACTTGTTAATGTCAAAGAAGGAGATGAGATTA
AGATAGAAGAAAATTTTGTGCCACGTGCTAATCTAACATGTGACAGTAACATTTACATGT
GGACTTCTTTGTTTGCCAAAGTAAACCTCTATTTATGAAACAGTAAAGGAGGAAATTTTT
CTCTTTCGGCTGATAGAATTAAAATAGAGCTGACTTCGAAGAATTTTTACCCTTTGGATC
ATGTCATCTCTCACGAATTCAACCTAGAGGACTTGCTTTTACCCACATAGCATCATTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTAGTGGAACTTCTCAGAATTTGAAATACAGCAGTGTATGCCATATGCGATGTCAGG
ATTCCTCAACTTAAACCCTATTGGGCATTAAATATAAATTCCCCTGAAAGGGAATAGTTT
TTGTGGTTTTCATCTGTCTTCATAATTCCGGATGAAAGTGTGTTGTAGAATTTGGGGCCA
GGCAATCGGAAGGAATTAGACTGAAAAATTTTTTTCAGAAGCATTTATTTCCTATTTTTC
AGAGTCAAACTGTCAAATTGAGTCTTTGATCTAACTTAATTCTGGGTTTCATTTTCGTTC
TCTTAATAGAGATACAAAAGACCTGTCTTCTGAGGGCAAGTATATTCTTAATGGGTCAGA
GCTACTTTAACATTCATTCATTCCCTTTACTTGTTAATGTCAAAGAAGGAGATGAGATTA
AGATAGAAGAAAATTTTGTGCCACGTGCTAATCTAACATGTGACAGTAACATTTACATGT
GGACTTCTTTGTTTGCCAAAGTAAACCTCTATTTATGAAACAGTAAAGGAGGAAATTTTT
CTCTTTCGGCTGATAGAATTAAAATAGAGCTGACTTCGAAGAATTTTTACCCTTTGGATC
ATGTCATCTCTCACGAATTCAACCTAGAGGACTTGCTTTTACCCACATAGCATCATTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-142, - strand, RNAz p=0.872909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-142, - strand, RNAz p=0.872909

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-659, gnl|bosTau2|chr4 (60286640-60285979)
               

               
               1-659, gnl|Hg17|chr7 (137727797-137728418)
               

               
               1-659, gnl|Mm7|chr6 (37897489-37898174)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-659, gnl|bosTau2|chr4 (60286640-60285979)
               

               
               1-659, gnl|Hg17|chr7 (137727797-137728418)
               

               
               1-659, gnl|Mm7|chr6 (37897489-37898174)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               liv (0.146284)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)

	1-659, gnl\|bosTau2\|chr4 (60286640-60285979)
	1-659, gnl\|Hg17\|chr7 (137727797-137728418)
	1-659, gnl\|Mm7\|chr6 (37897489-37898174)