Non-Coding RNA Search

Ss1.1-Pig3-SRG8017D01.5

Sequence:


               
               GATCCAGAACTACAACCATGACATTGCTCTAGTGCAGCTGCAGGAGCCGGTGCCCCTGGG
GCCGCACGTCATGCCCGTCTGCCTGCCGAGGCCTGAGCCCGAAGGCCCGGCGCCCCACAT
GCTGGGGCTGGTAGCTGGCTGGGGCATCTCCAATCCTAATGTGACAGTGGATGAGATCAT
CAGCAGCGGCACGCGGACCTTGTCAGATGTCCTGCAGTATGTCAAGTTACCCGTGGTGCC
GCACGCCGAGTGCAAGACCAGCTACGAGTCCCGGTCAGGCAACTACAGCGTCACAGAGAA
CATGTTCTGTGCCGGCTACTATGAGGGCGGCAAGGACACGTGCCTAGGAGACAGCGGCGG
GGCCTTTGTCATCCTTGACGACCTGAGCCAACGCTGGGTGGCTCAAGGCCTGGTGTCCTG
GGGGGGCCCTGAAGAATGTGGCAGTAAGCAGGTGTATGGGGTCTACACCAAAGTCTCCAA
CTACGTGGACTGGGTGTGGGAGCAGATGGGCTCCCCTCCAGGCCTGGGGGAGCTCCAGGT
GGAGCGGTGAGCCCTGACTTCCTTGGCCTCCAGCCCACCCAGCCCCTGCAAGGCTGCATC
ATACACTCCTGAGGATGGCATACTCCATGTTACTCATGAGACCAAATGGGATGGAACACG
CTGCTTCCACCCTCCCAAGACAACCCCTGGGAGGCAGCAAAGTGGTATGGGAAAAAGGAT
CTATTCAGGAGACCTGGGTCCCTGGCCCTGGGCTGGTCCCTTCCCCTCCTGGGGCCTCAC
TCTCCCAGGAGCACAGCAACTCTTGGCCAACTCCCACTCCTCTCCTGGAGTGCCTACCCC
AGGGGCCTCCTTCACTCCTTGCCGTTTGTCAAACCCATTGGTCCTACTATTGGCGTAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCAGAACTACAACCATGACATTGCTCTAGTGCAGCTGCAGGAGCCGGTGCCCCTGGG
GCCGCACGTCATGCCCGTCTGCCTGCCGAGGCCTGAGCCCGAAGGCCCGGCGCCCCACAT
GCTGGGGCTGGTAGCTGGCTGGGGCATCTCCAATCCTAATGTGACAGTGGATGAGATCAT
CAGCAGCGGCACGCGGACCTTGTCAGATGTCCTGCAGTATGTCAAGTTACCCGTGGTGCC
GCACGCCGAGTGCAAGACCAGCTACGAGTCCCGGTCAGGCAACTACAGCGTCACAGAGAA
CATGTTCTGTGCCGGCTACTATGAGGGCGGCAAGGACACGTGCCTAGGAGACAGCGGCGG
GGCCTTTGTCATCCTTGACGACCTGAGCCAACGCTGGGTGGCTCAAGGCCTGGTGTCCTG
GGGGGGCCCTGAAGAATGTGGCAGTAAGCAGGTGTATGGGGTCTACACCAAAGTCTCCAA
CTACGTGGACTGGGTGTGGGAGCAGATGGGCTCCCCTCCAGGCCTGGGGGAGCTCCAGGT
GGAGCGGTGAGCCCTGACTTCCTTGGCCTCCAGCCCACCCAGCCCCTGCAAGGCTGCATC
ATACACTCCTGAGGATGGCATACTCCATGTTACTCATGAGACCAAATGGGATGGAACACG
CTGCTTCCACCCTCCCAAGACAACCCCTGGGAGGCAGCAAAGTGGTATGGGAAAAAGGAT
CTATTCAGGAGACCTGGGTCCCTGGCCCTGGGCTGGTCCCTTCCCCTCCTGGGGCCTCAC
TCTCCCAGGAGCACAGCAACTCTTGGCCAACTCCCACTCCTCTCCTGGAGTGCCTACCCC
AGGGGCCTCCTTCACTCCTTGCCGTTTGTCAAACCCATTGGTCCTACTATTGGCGTAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6808451|emb|CAB70856.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6808451|emb|CAB70856.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               322-441, + strand, RNAz p=0.943985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-441, + strand, RNAz p=0.943985

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139125, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139125, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-900, gnl|bosTau2|chr1 (50017469-50016556)
               

               
               2-900, gnl|Hg17|chr3 (188436722-188435790)
               

               
               2-900, gnl|Mm7|chr16 (23129008-23128138)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-900, gnl|bosTau2|chr1 (50017469-50016556)
               

               
               2-900, gnl|Hg17|chr3 (188436722-188435790)
               

               
               2-900, gnl|Mm7|chr16 (23129008-23128138)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	2-900, gnl\|bosTau2\|chr1 (50017469-50016556)
	2-900, gnl\|Hg17\|chr3 (188436722-188435790)
	2-900, gnl\|Mm7\|chr16 (23129008-23128138)