Non-Coding RNA Search

Ss1.1-Pig3-SRG8017D03.5

Sequence:


               
               GCATTACTAATCCCCAAGAGGAATGTGTCAGAGTTATTTCACCATGGAAAACTTTTACCA
AATGTTATCTAAAAGGCAGACCATAGATAGGACAACTTGTGGGAAATATTTTTCTAGATA
TTCAATTAACAGACTTTTACCGCAGGCCTCAGCAGAGATAAAGACCGAACCGTGTGCAAT
TGCCAACATCGGACCAACCAGAAATGAATGATTTTTTATGGTTCAAATTAAAACAATTTA
GAAAAATTATTCCAACCAGGAGGGAACTTTGAAATCTTCAACTAAACTGAAGAATGGAAG
GGCTATGTAGTGAATATGTTTTGAATATTCTCGAATGATGTTTTCCCTAACTTTTTCTAT
AAAAAAATATAAAGCTGTTTAAGAGCATAAACACAGTATTCAACAATAACAATAACGAAG
GGAGCAAAACCAAAAAAGCAAATTTTTAAACTGATGATCTTGGGTTTTTTGACCAAAGGA
AGGCCATATTCAATGGACAGAAAAGCCAGACAGAAACATAGGGCCTCTTAAAATTATATC
AATTTTTTTTCCGAAACATCAATATTCACTCCAGCCTTTGGATCAGAAACTAAGGTCAGA
ATAAACAGTGATATGAGAACTGAAGAAGTAATAAAGCAGATTCTCCAAAAATTTAAGATT
GAAAATAGTGCCCAGGATTTTGCACTTTACATTATTTTTTCAACAGGAGAGCAGAGACGG
CTAAAGAAGACAGACATTCCGCTACTGCACAGACTCCTACAGGGACCTTCCAAAAAGAAC
GCTCGCATTTTCCTCATGGACAAAGATGCAGAAGAAATTAGCAGTGATGTGGCTCAGTAT
ATTAACTTTCATTTTTCTCTCCTGGAATCCATCCTTCAAAGATTAAATGAAGAGGAGAAA
AGAGAGATTCAAAGAACAATAATAAAATTCAGGACAGAAAAGGCTATCATCCTGAAATAT
CTTCAAAGTAAACGGGTAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTACTAATCCCCAAGAGGAATGTGTCAGAGTTATTTCACCATGGAAAACTTTTACCA
AATGTTATCTAAAAGGCAGACCATAGATAGGACAACTTGTGGGAAATATTTTTCTAGATA
TTCAATTAACAGACTTTTACCGCAGGCCTCAGCAGAGATAAAGACCGAACCGTGTGCAAT
TGCCAACATCGGACCAACCAGAAATGAATGATTTTTTATGGTTCAAATTAAAACAATTTA
GAAAAATTATTCCAACCAGGAGGGAACTTTGAAATCTTCAACTAAACTGAAGAATGGAAG
GGCTATGTAGTGAATATGTTTTGAATATTCTCGAATGATGTTTTCCCTAACTTTTTCTAT
AAAAAAATATAAAGCTGTTTAAGAGCATAAACACAGTATTCAACAATAACAATAACGAAG
GGAGCAAAACCAAAAAAGCAAATTTTTAAACTGATGATCTTGGGTTTTTTGACCAAAGGA
AGGCCATATTCAATGGACAGAAAAGCCAGACAGAAACATAGGGCCTCTTAAAATTATATC
AATTTTTTTTCCGAAACATCAATATTCACTCCAGCCTTTGGATCAGAAACTAAGGTCAGA
ATAAACAGTGATATGAGAACTGAAGAAGTAATAAAGCAGATTCTCCAAAAATTTAAGATT
GAAAATAGTGCCCAGGATTTTGCACTTTACATTATTTTTTCAACAGGAGAGCAGAGACGG
CTAAAGAAGACAGACATTCCGCTACTGCACAGACTCCTACAGGGACCTTCCAAAAAGAAC
GCTCGCATTTTCCTCATGGACAAAGATGCAGAAGAAATTAGCAGTGATGTGGCTCAGTAT
ATTAACTTTCATTTTTCTCTCCTGGAATCCATCCTTCAAAGATTAAATGAAGAGGAGAAA
AGAGAGATTCAAAGAACAATAATAAAATTCAGGACAGAAAAGGCTATCATCCTGAAATAT
CTTCAAAGTAAACGGGTAATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55622660|ref|XP_526588.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55622660|ref|XP_526588.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-266, + strand, RNAz p=0.890356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-266, + strand, RNAz p=0.890356

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-657, gnl|bosTau2|chr28 (25406707-25407378)
               


               
               691-830, gnl|bosTau2|chr28 (25414556-25414696)
               

               
               691-830, gnl|canFam2|chr13 (65239315-65239483)
               

               
               691-830, gnl|danRer3|chrNA (49605212-49605054)
               

               
               691-830, gnl|dasNov1|scaffold_191410 (123-4)
               

               
               691-830, gnl|echTel1|scaffold_301818 (4322-4488)
               

               
               691-830, gnl|fr1|chrUn (60665292-60665143)
               

               
               691-830, gnl|galGal2|chr4 (51415001-51415169)
               

               
               691-830, gnl|hg17|chr4 (74807356-74807523)
               

               
               691-830, gnl|Hg17|chr4 (74807502-74807363)
               

               
               691-830, gnl|loxAfr1|scaffold_33471 (14745-14913)
               

               
               691-830, gnl|mm7|chr5 (90575511-90575677)
               

               
               691-830, gnl|Mm7|chr5 (90575657-90575518)
               

               
               691-830, gnl|monDom2|scaffold_32 (18635966-18636117)
               

               
               691-830, gnl|oryCun1|scaffold_185899 (42667-42835)
               

               
               691-830, gnl|panTro1|chr3 (58904499-58904332)
               

               
               691-830, gnl|rheMac2|chr5 (56108203-56108036)
               

               
               691-830, gnl|rn3|chr14 (18986564-18986397)
               

               
               691-830, gnl|tetNig1|chrUn_random (53428239-53428372)
               

               
               691-830, gnl|xenTro1|scaffold_1401 (126805-126614)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-657, gnl|bosTau2|chr28 (25406707-25407378)
               


               
               691-830, gnl|bosTau2|chr28 (25414556-25414696)
               

               
               691-830, gnl|canFam2|chr13 (65239315-65239483)
               

               
               691-830, gnl|danRer3|chrNA (49605212-49605054)
               

               
               691-830, gnl|dasNov1|scaffold_191410 (123-4)
               

               
               691-830, gnl|echTel1|scaffold_301818 (4322-4488)
               

               
               691-830, gnl|fr1|chrUn (60665292-60665143)
               

               
               691-830, gnl|galGal2|chr4 (51415001-51415169)
               

               
               691-830, gnl|hg17|chr4 (74807356-74807523)
               

               
               691-830, gnl|Hg17|chr4 (74807502-74807363)
               

               
               691-830, gnl|loxAfr1|scaffold_33471 (14745-14913)
               

               
               691-830, gnl|mm7|chr5 (90575511-90575677)
               

               
               691-830, gnl|Mm7|chr5 (90575657-90575518)
               

               
               691-830, gnl|monDom2|scaffold_32 (18635966-18636117)
               

               
               691-830, gnl|oryCun1|scaffold_185899 (42667-42835)
               

               
               691-830, gnl|panTro1|chr3 (58904499-58904332)
               

               
               691-830, gnl|rheMac2|chr5 (56108203-56108036)
               

               
               691-830, gnl|rn3|chr14 (18986564-18986397)
               

               
               691-830, gnl|tetNig1|chrUn_random (53428239-53428372)
               

               
               691-830, gnl|xenTro1|scaffold_1401 (126805-126614)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               kid (0.129735)

	1-657, gnl\|bosTau2\|chr28 (25406707-25407378)

	691-830, gnl\|bosTau2\|chr28 (25414556-25414696)
	691-830, gnl\|canFam2\|chr13 (65239315-65239483)
	691-830, gnl\|danRer3\|chrNA (49605212-49605054)
	691-830, gnl\|dasNov1\|scaffold_191410 (123-4)
	691-830, gnl\|echTel1\|scaffold_301818 (4322-4488)
	691-830, gnl\|fr1\|chrUn (60665292-60665143)
	691-830, gnl\|galGal2\|chr4 (51415001-51415169)
	691-830, gnl\|hg17\|chr4 (74807356-74807523)
	691-830, gnl\|Hg17\|chr4 (74807502-74807363)
	691-830, gnl\|loxAfr1\|scaffold_33471 (14745-14913)
	691-830, gnl\|mm7\|chr5 (90575511-90575677)
	691-830, gnl\|Mm7\|chr5 (90575657-90575518)
	691-830, gnl\|monDom2\|scaffold_32 (18635966-18636117)
	691-830, gnl\|oryCun1\|scaffold_185899 (42667-42835)
	691-830, gnl\|panTro1\|chr3 (58904499-58904332)
	691-830, gnl\|rheMac2\|chr5 (56108203-56108036)
	691-830, gnl\|rn3\|chr14 (18986564-18986397)
	691-830, gnl\|tetNig1\|chrUn_random (53428239-53428372)
	691-830, gnl\|xenTro1\|scaffold_1401 (126805-126614)