Non-Coding RNA Search

Ss1.1-Pig3-SRG8017E07.3

Sequence:


               
               ATCGGCTTTATAAAAATAAAGTTAGCGCCGCCCGAGCCGGGGCAGAAGCCTCCTTCGATG
CGGCACAGGGGGCGCTGGGACGGGGCGCGAATAAATAACGGGGAGGGCGCTCAGCGCGCC
CGGAGGAAGCGCGCGCGGACTCCGCGCTCCAGCCCCGGCAGCCTGGGCGTGCGCAGCGCC
GGCAGCAGCCGCGCCACCAGCGCCCCGGGCCGCGCCTCACGGAGCTCCGTGAGCTGTCGC
AGCAGCCTGAGCTGCAGGGCCGCGCGGTCCTCCCTCGGCGGCGGCGGACTCAGCGGCCCT
GGGCCGGCGAGGGCCTGCTGCAGCCGCAGGAGCCTCTTGGAGGACAAATCCTGGAAAGCT
ACGAAGTCGACGACAGCGCGCTCGCACTCCTCGGTCCCCGGCGCCCCCCGCTCCAGCGAG
CCGAGTGGGAAGCCCGTGCAGTTGGTGCACAGGGCGTCGTGGAAGGAGGAGCCCGGCACG
TTGACGGCCAGGCCCACGGCCGTGCAGTTGCGGTGGGGCCGGCACTGCTCCGAACTCGAG
CTGCTGTCTGAAAAGGTGCCCGGGGGGCACGCCTGGCACTGCGTGTTCTGGCTGGGGGTG
CCGAGGGCCGCCACGCCGGCGCCAGGCGGGCAGGGCGCGTGCTCCAGGCAGAAGCCGGCA
TGCGCGAAGAAGCCGGGGCGACAGCGGCAGACGCGGTTGTGGGTGGCCCCGCACGGCCGC
GCCTCCTCCTCGCGCTCCCCGCAGAAGACGTTGCAGTACCGGCAGCGCTCCAGGTAGTTC
CAGAACTGCGTGTAGTGGCGCGGCGGGCACGCGTCGCACGTCGTGGGGCTGTCCGGGCCA
CAAGGCCGCCGCACGAAGGTGCCCGGCGGGCACTGGCCACACACCAGCCACTCCCCGGTC
TCCGCGTCCCGCCACGGGTAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGCTTTATAAAAATAAAGTTAGCGCCGCCCGAGCCGGGGCAGAAGCCTCCTTCGATG
CGGCACAGGGGGCGCTGGGACGGGGCGCGAATAAATAACGGGGAGGGCGCTCAGCGCGCC
CGGAGGAAGCGCGCGCGGACTCCGCGCTCCAGCCCCGGCAGCCTGGGCGTGCGCAGCGCC
GGCAGCAGCCGCGCCACCAGCGCCCCGGGCCGCGCCTCACGGAGCTCCGTGAGCTGTCGC
AGCAGCCTGAGCTGCAGGGCCGCGCGGTCCTCCCTCGGCGGCGGCGGACTCAGCGGCCCT
GGGCCGGCGAGGGCCTGCTGCAGCCGCAGGAGCCTCTTGGAGGACAAATCCTGGAAAGCT
ACGAAGTCGACGACAGCGCGCTCGCACTCCTCGGTCCCCGGCGCCCCCCGCTCCAGCGAG
CCGAGTGGGAAGCCCGTGCAGTTGGTGCACAGGGCGTCGTGGAAGGAGGAGCCCGGCACG
TTGACGGCCAGGCCCACGGCCGTGCAGTTGCGGTGGGGCCGGCACTGCTCCGAACTCGAG
CTGCTGTCTGAAAAGGTGCCCGGGGGGCACGCCTGGCACTGCGTGTTCTGGCTGGGGGTG
CCGAGGGCCGCCACGCCGGCGCCAGGCGGGCAGGGCGCGTGCTCCAGGCAGAAGCCGGCA
TGCGCGAAGAAGCCGGGGCGACAGCGGCAGACGCGGTTGTGGGTGGCCCCGCACGGCCGC
GCCTCCTCCTCGCGCTCCCCGCAGAAGACGTTGCAGTACCGGCAGCGCTCCAGGTAGTTC
CAGAACTGCGTGTAGTGGCGCGGCGGGCACGCGTCGCACGTCGTGGGGCTGTCCGGGCCA
CAAGGCCGCCGCACGAAGGTGCCCGGCGGGCACTGGCCACACACCAGCCACTCCCCGGTC
TCCGCGTCCCGCCACGGGTAGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835049|ref|XP_582057.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835049|ref|XP_582057.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               760-879, - strand, RNAz p=0.507015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               760-879, - strand, RNAz p=0.507015

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL157435, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL157435, -

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-398, gnl|bosTau2|chr13 (35119217-35119615)
               

               
               1-398, gnl|Hg17|chr20 (61800473-61800076)
               


               
               601-924, gnl|bosTau2|chr13 (35120309-35120632)
               

               
               601-924, gnl|Hg17|chr20 (61798989-61798666)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-398, gnl|bosTau2|chr13 (35119217-35119615)
               

               
               1-398, gnl|Hg17|chr20 (61800473-61800076)
               


               
               601-924, gnl|bosTau2|chr13 (35120309-35120632)
               

               
               601-924, gnl|Hg17|chr20 (61798989-61798666)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ebs (0.118301)

	1-398, gnl\|bosTau2\|chr13 (35119217-35119615)
	1-398, gnl\|Hg17\|chr20 (61800473-61800076)

	601-924, gnl\|bosTau2\|chr13 (35120309-35120632)
	601-924, gnl\|Hg17\|chr20 (61798989-61798666)