Non-Coding RNA Search

Ss1.1-Pig3-SRG8017F02.3

Sequence:


               
               CGCCCGGTACCTGGGCCACTGGGCCACTGCTTCCTCCTTCCTCATGTTGGTCCCCTGGGC
CACCGTCTCCTCAGGGCATGCAGGCCAGTGTCCTGAGTCAGTGTCACGGCCACAGCTCTG
TGCAGGGATGGCCTCGGTCCAGAGCCGAAGGCCTCTGGCAAGGCTGGCGGGATCAGAGCC
GCCAAGGCCAGCCGTGCTGGCCTCAGTCCGAGAGGAAGACCCGACTGGCCTTTGTCCCCG
AACAGACTCCCCACGACAAAACCGGGCCACGCGCTTCCAAAGGCCAGTTTCCTGAGCCCC
ACGCCTGTCCCTCCGCCCCCTTCTCACCACCTGTCCTGTCCTGTCCTGTCCTCCAGTGAG
GTGGGAAGACAAGGGCCTGGCAGGGGCCAGGCTGGGCTTGGGGCGCCCTCCCCGAGGGTC
TGACCCTGCAGGCCAAGGGGGGCCACTGTTCCGTCCTGCAGCCCCCACGCGGGTCTGCGC
GTTGCTTGGTTCCTAGGATGTACGTGTTGCTAGTTTGGTTTTTTTTTTAATGGAAAACAA
GATAAATGTAAATAGCCTTTTGGGAAACAGAGTCTAACCCGTCCCGTATGTGACCACGTG
GACTATTTAAGGTGCTGATGCGAGACTAATAAAGCCGGGAGCACGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCGGTACCTGGGCCACTGGGCCACTGCTTCCTCCTTCCTCATGTTGGTCCCCTGGGC
CACCGTCTCCTCAGGGCATGCAGGCCAGTGTCCTGAGTCAGTGTCACGGCCACAGCTCTG
TGCAGGGATGGCCTCGGTCCAGAGCCGAAGGCCTCTGGCAAGGCTGGCGGGATCAGAGCC
GCCAAGGCCAGCCGTGCTGGCCTCAGTCCGAGAGGAAGACCCGACTGGCCTTTGTCCCCG
AACAGACTCCCCACGACAAAACCGGGCCACGCGCTTCCAAAGGCCAGTTTCCTGAGCCCC
ACGCCTGTCCCTCCGCCCCCTTCTCACCACCTGTCCTGTCCTGTCCTGTCCTCCAGTGAG
GTGGGAAGACAAGGGCCTGGCAGGGGCCAGGCTGGGCTTGGGGCGCCCTCCCCGAGGGTC
TGACCCTGCAGGCCAAGGGGGGCCACTGTTCCGTCCTGCAGCCCCCACGCGGGTCTGCGC
GTTGCTTGGTTCCTAGGATGTACGTGTTGCTAGTTTGGTTTTTTTTTTAATGGAAAACAA
GATAAATGTAAATAGCCTTTTGGGAAACAGAGTCTAACCCGTCCCGTATGTGACCACGTG
GACTATTTAAGGTGCTGATGCGAGACTAATAAAGCCGGGAGCACGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-404, - strand, RNAz p=0.962461

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-404, - strand, RNAz p=0.962461

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               166-647, gnl|bosTau2|chr21 (49438326-49437841)
               

               
               166-647, gnl|Hg17|chr14 (104935066-104935521)
               

               
               166-647, gnl|Mm7|chr12 (110598889-110599318)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-647, gnl|bosTau2|chr21 (49438326-49437841)
               

               
               166-647, gnl|Hg17|chr14 (104935066-104935521)
               

               
               166-647, gnl|Mm7|chr12 (110598889-110599318)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	166-647, gnl\|bosTau2\|chr21 (49438326-49437841)
	166-647, gnl\|Hg17\|chr14 (104935066-104935521)
	166-647, gnl\|Mm7\|chr12 (110598889-110599318)

	fcc (0.197785)
	fbs (0.175346)
	pla (0.133672)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)