Non-Coding RNA Search

Ss1.1-Pig3-SRG8017G07.3

Sequence:


               
               AGGAATAGTGGCTCCCCACCGTGCTTTCAGAGTAGAACATTCCTCATCTGACACCCACTG
TGGCTTTTCTCTGATTACATACATGTCTTTCCCTCAGAGGTAGCCACTATCCTAAATTTT
CTGTTCATCATTTCCTTGTTTGTATTTACAGTTTTGCACTGTTTAGTTCTGCGTTTAGAA
TATTTTATGCAAATGGAATTATACTATATATAAGGTCTTCTATCCTTCTTTTATTCAAAA
ACTTTAAAATTGAACCATGCTGACAAACTTTTATTACTGTATAATATTATACAGTACGAA
TACCATAATTTATCCATTTGCCAGTTAGTGGACATTTAGATTGTCTACTATTTGTCTGTT
CTTACATCCAGGGGGTATACCATTTTGTTGTAAAATTTGTGTTGAAGACTAGTGAACGTG
GACTTCTAAACTTTTGTGGTCCTAATGACATGTAAAAATAGATTTCATATTTTGCCTCTA
TTAAAAATGTATGGCTTGTTAATGATATGAAAAACTGTTATCAAGTCTAAGGCTATGGTT
ATAATTTCTACTTTTCACAATCTTTGAAATTATTTTACAATGTCAGTATATAGTGAATTT
GTAAGTTTTTTGAGAAAAAGGCAGTGAGATTTTAAAATTACATATTAATGGAAATTGTAA
AATATTTTTCATCAAAATAGAGTTTAGAATATAAATTATTCTGTTTGAAGTTTTTGTTAA
TAGCATTAATAGCTTTTAATAGTAATTCAGTTTTGAAAATAATAACTTATGGCAAATACT
GTTTCTTTCAATCCATTAAATCATTTATAAACATTTAAACTACTTAATGTTAAGAAAAAA
GTAGCTTCATGTGAGCCTCAAACTCATGGAAACAAAGTTTTTGTGCATCCAGAAACACGA
ATAAAGTCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATAGTGGCTCCCCACCGTGCTTTCAGAGTAGAACATTCCTCATCTGACACCCACTG
TGGCTTTTCTCTGATTACATACATGTCTTTCCCTCAGAGGTAGCCACTATCCTAAATTTT
CTGTTCATCATTTCCTTGTTTGTATTTACAGTTTTGCACTGTTTAGTTCTGCGTTTAGAA
TATTTTATGCAAATGGAATTATACTATATATAAGGTCTTCTATCCTTCTTTTATTCAAAA
ACTTTAAAATTGAACCATGCTGACAAACTTTTATTACTGTATAATATTATACAGTACGAA
TACCATAATTTATCCATTTGCCAGTTAGTGGACATTTAGATTGTCTACTATTTGTCTGTT
CTTACATCCAGGGGGTATACCATTTTGTTGTAAAATTTGTGTTGAAGACTAGTGAACGTG
GACTTCTAAACTTTTGTGGTCCTAATGACATGTAAAAATAGATTTCATATTTTGCCTCTA
TTAAAAATGTATGGCTTGTTAATGATATGAAAAACTGTTATCAAGTCTAAGGCTATGGTT
ATAATTTCTACTTTTCACAATCTTTGAAATTATTTTACAATGTCAGTATATAGTGAATTT
GTAAGTTTTTTGAGAAAAAGGCAGTGAGATTTTAAAATTACATATTAATGGAAATTGTAA
AATATTTTTCATCAAAATAGAGTTTAGAATATAAATTATTCTGTTTGAAGTTTTTGTTAA
TAGCATTAATAGCTTTTAATAGTAATTCAGTTTTGAAAATAATAACTTATGGCAAATACT
GTTTCTTTCAATCCATTAAATCATTTATAAACATTTAAACTACTTAATGTTAAGAAAAAA
GTAGCTTCATGTGAGCCTCAAACTCATGGAAACAAAGTTTTTGTGCATCCAGAAACACGA
ATAAAGTCTATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               245-345, - strand, RNAz p=0.761062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-345, - strand, RNAz p=0.761062

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-846, gnl|bosTau2|chr13 (14242333-14243170)
               

               
               11-846, gnl|Hg17|chr10 (25357695-25358509)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-846, gnl|bosTau2|chr13 (14242333-14243170)
               

               
               11-846, gnl|Hg17|chr10 (25357695-25358509)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	11-846, gnl\|bosTau2\|chr13 (14242333-14243170)
	11-846, gnl\|Hg17\|chr10 (25357695-25358509)