Non-Coding RNA Search

Ss1.1-Pig3-SRG8017H07.5

Sequence:


               
               AAAAAGCTACCAGAAAAAAAAAAAAAAAAAGATGTCAGGAAGTTGTATTCAGGTACAAAT
CTTTTTTCTTAAATAACTATTTTATTGAGATTGACGAATTGCTGGCAATTAAAAGAATAG
TGCTAATTATGGCTTTCATCATTTATTCAAGTATTTATTAAGCACCTGCTTACATGGTGC
TCAACACTTGTTACTGCAAGCTACCTTAATTTTCTAAGAGTGGTGCCTTACTCTGTTTCT
TCTGATGTGGTCTTCCAATCAGTGTGTGTAACATATACCTGTTATTCATCAGCCATTGTA
GGTGGCTGTATCTGTTGCATCATCATAAGAAGTTTAAGCTTTGAGCTCTGTGTTTTATTG
AAGGGGGTTGTTAATAGGATGAAAACATGGAAACAATTTTTTTCAACCAGTTGTAAATTA
TAAGAAAATAATTGGCTTATGTACAGCCATTTTAATGATTCCCTTGTTCATTTTTGCTGT
GAAATGCACTGAAAAAAAAATCTCAAAATGAGTTATAGTTCATGTGTTGGGAAGATTAAA
AAAATAATAAAACTAGAGAACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCTACCAGAAAAAAAAAAAAAAAAAGATGTCAGGAAGTTGTATTCAGGTACAAAT
CTTTTTTCTTAAATAACTATTTTATTGAGATTGACGAATTGCTGGCAATTAAAAGAATAG
TGCTAATTATGGCTTTCATCATTTATTCAAGTATTTATTAAGCACCTGCTTACATGGTGC
TCAACACTTGTTACTGCAAGCTACCTTAATTTTCTAAGAGTGGTGCCTTACTCTGTTTCT
TCTGATGTGGTCTTCCAATCAGTGTGTGTAACATATACCTGTTATTCATCAGCCATTGTA
GGTGGCTGTATCTGTTGCATCATCATAAGAAGTTTAAGCTTTGAGCTCTGTGTTTTATTG
AAGGGGGTTGTTAATAGGATGAAAACATGGAAACAATTTTTTTCAACCAGTTGTAAATTA
TAAGAAAATAATTGGCTTATGTACAGCCATTTTAATGATTCCCTTGTTCATTTTTGCTGT
GAAATGCACTGAAAAAAAAATCTCAAAATGAGTTATAGTTCATGTGTTGGGAAGATTAAA
AAAATAATAAAACTAGAGAACAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               103-259, - strand, RNAz p=0.954805

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-259, - strand, RNAz p=0.954805

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               25-562, gnl|bosTau2|chr1 (37444152-37444687)
               

               
               25-562, gnl|canFam2|chr33 (31545051-31545476)
               

               
               25-562, gnl|echTel1|scaffold_62457 (70-479)
               

               
               25-562, gnl|galGal2|chr7 (28840667-28841114)
               

               
               25-562, gnl|hg17|chr3 (126730348-126730775)
               

               
               25-562, gnl|Hg17|chr3 (126730935-126730393)
               

               
               25-562, gnl|loxAfr1|scaffold_42291 (534-955)
               

               
               25-562, gnl|mm7|chr16 (32917879-32917496)
               

               
               25-562, gnl|Mm7|chr16 (32917352-32917833)
               

               
               25-562, gnl|monDom2|scaffold_24 (24614301-24614739)
               

               
               25-562, gnl|oryCun1|scaffold_184334 (4921-4529)
               

               
               25-562, gnl|panTro1|chr2 (128568891-128569318)
               

               
               25-562, gnl|rheMac2|chr2 (45518146-45518569)
               

               
               25-562, gnl|rn3|chr11 (69413550-69413918)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-562, gnl|bosTau2|chr1 (37444152-37444687)
               

               
               25-562, gnl|canFam2|chr33 (31545051-31545476)
               

               
               25-562, gnl|echTel1|scaffold_62457 (70-479)
               

               
               25-562, gnl|galGal2|chr7 (28840667-28841114)
               

               
               25-562, gnl|hg17|chr3 (126730348-126730775)
               

               
               25-562, gnl|Hg17|chr3 (126730935-126730393)
               

               
               25-562, gnl|loxAfr1|scaffold_42291 (534-955)
               

               
               25-562, gnl|mm7|chr16 (32917879-32917496)
               

               
               25-562, gnl|Mm7|chr16 (32917352-32917833)
               

               
               25-562, gnl|monDom2|scaffold_24 (24614301-24614739)
               

               
               25-562, gnl|oryCun1|scaffold_184334 (4921-4529)
               

               
               25-562, gnl|panTro1|chr2 (128568891-128569318)
               

               
               25-562, gnl|rheMac2|chr2 (45518146-45518569)
               

               
               25-562, gnl|rn3|chr11 (69413550-69413918)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	25-562, gnl\|bosTau2\|chr1 (37444152-37444687)
	25-562, gnl\|canFam2\|chr33 (31545051-31545476)
	25-562, gnl\|echTel1\|scaffold_62457 (70-479)
	25-562, gnl\|galGal2\|chr7 (28840667-28841114)
	25-562, gnl\|hg17\|chr3 (126730348-126730775)
	25-562, gnl\|Hg17\|chr3 (126730935-126730393)
	25-562, gnl\|loxAfr1\|scaffold_42291 (534-955)
	25-562, gnl\|mm7\|chr16 (32917879-32917496)
	25-562, gnl\|Mm7\|chr16 (32917352-32917833)
	25-562, gnl\|monDom2\|scaffold_24 (24614301-24614739)
	25-562, gnl\|oryCun1\|scaffold_184334 (4921-4529)
	25-562, gnl\|panTro1\|chr2 (128568891-128569318)
	25-562, gnl\|rheMac2\|chr2 (45518146-45518569)
	25-562, gnl\|rn3\|chr11 (69413550-69413918)

	vin (0.332557)
	fat (0.294855)
	mga (0.160205)
	cag (0.151194)
	ssp (0.13552)
	thg (0.126791)
	spc (0.113366)
	ldo (0.0970026)