Non-Coding RNA Search

Ss1.1-Pig3-SRG8017I08.3

Sequence:


               
               GACGACAGCGTCGTTATTGGGGGGAAGCCGTATGTCTTTGACCGTGTGTTCCCCCCAAAC
ACGACTCATGAGCAAGTTTATCATGCATGTGCCATGCAGATTGTCAAAGATGTCCTTGCT
GGCTACAATGGCACCATTTTTGCTTATGGACAGACATCCTCAGGGAAAACACATACTATG
GAGGGAAAGCTGCATGACCCCCAGCTGATGGGGATCATTCCTCGAATTGCCCGAGACATC
TTCAACCACATCTACTCCATGGACGAGAACCTTGAGTTCCACATCAAGGTGTCTTACTTT
GAGATTTACCTGGACAAAATTCGTGACCTTCTGGATGTGACCAAGACAAATCTGTCTGTG
CACGAGGACAAGAACCGGGTGCCGTTTGTCAAGGGTTGTACCGAACGCTTTGTGTCCAGC
CCAGAGGAGATTTTAGATGTGATTGATGAAGGGAAATCAAATCGTCATGTGGCTGTCACT
AGTGAGTGGGGATATAAGGGGCTCTTGAATTCCCGGGCCTGCCTCTCCTCTGTGCCTTCT
GGGGATGAGGGCCTCAAAAACAAGAAAGGGGGAGTTCCTGTTGTGGTGCAGTGGGTGAAG
AATCCGACAGCAGCGGCTCCGGTCACTGCAGAGGTGCAAGTTCGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGACAGCGTCGTTATTGGGGGGAAGCCGTATGTCTTTGACCGTGTGTTCCCCCCAAAC
ACGACTCATGAGCAAGTTTATCATGCATGTGCCATGCAGATTGTCAAAGATGTCCTTGCT
GGCTACAATGGCACCATTTTTGCTTATGGACAGACATCCTCAGGGAAAACACATACTATG
GAGGGAAAGCTGCATGACCCCCAGCTGATGGGGATCATTCCTCGAATTGCCCGAGACATC
TTCAACCACATCTACTCCATGGACGAGAACCTTGAGTTCCACATCAAGGTGTCTTACTTT
GAGATTTACCTGGACAAAATTCGTGACCTTCTGGATGTGACCAAGACAAATCTGTCTGTG
CACGAGGACAAGAACCGGGTGCCGTTTGTCAAGGGTTGTACCGAACGCTTTGTGTCCAGC
CCAGAGGAGATTTTAGATGTGATTGATGAAGGGAAATCAAATCGTCATGTGGCTGTCACT
AGTGAGTGGGGATATAAGGGGCTCTTGAATTCCCGGGCCTGCCTCTCCTCTGTGCCTTCT
GGGGATGAGGGCCTCAAAAACAAGAAAGGGGGAGTTCCTGTTGTGGTGCAGTGGGTGAAG
AATCCGACAGCAGCGGCTCCGGTCACTGCAGAGGTGCAAGTTCGATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3891778|pdb|3KIN|C

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3891778|pdb|3KIN|C

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               169-291, gnl|bosTau2|chr5 (34735392-34735270)
               

               
               169-291, gnl|Hg17|chr12 (56244143-56244265)
               

               
               169-291, gnl|Mm7|chr10 (126749028-126748906)
               


               
               392-559, gnl|bosTau2|chr5 (34734252-34734085)
               

               
               392-559, gnl|Hg17|chr12 (56247174-56247343)
               

               
               392-559, gnl|Mm7|chr10 (126747180-126747019)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-291, gnl|bosTau2|chr5 (34735392-34735270)
               

               
               169-291, gnl|Hg17|chr12 (56244143-56244265)
               

               
               169-291, gnl|Mm7|chr10 (126749028-126748906)
               


               
               392-559, gnl|bosTau2|chr5 (34734252-34734085)
               

               
               392-559, gnl|Hg17|chr12 (56247174-56247343)
               

               
               392-559, gnl|Mm7|chr10 (126747180-126747019)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	169-291, gnl\|bosTau2\|chr5 (34735392-34735270)
	169-291, gnl\|Hg17\|chr12 (56244143-56244265)
	169-291, gnl\|Mm7\|chr10 (126749028-126748906)

	392-559, gnl\|bosTau2\|chr5 (34734252-34734085)
	392-559, gnl\|Hg17\|chr12 (56247174-56247343)
	392-559, gnl\|Mm7\|chr10 (126747180-126747019)