Ss1.1-Pig3-SRG8017J09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAAGAAGAGCAACACTTTGCCCAGATGAAGAGAACGCACCTGCTTGTGCTGGGGGTCT ACCTGCTGTCCTCCTGCGGGGCGGAGGAGGGGCTGAACTTCCCCACCTATGACGGCAAGG ACCGCGTGGTCAGTCTGACCGAGAAGAACTTCAAGCAGGTTTTGAAGAAATACGACTTGC TCTGCCTCTACTACCACGAGCCCGTGACTTCAGATAAAGTCTCGCAGAAGCAGTTCCAGC TGAAATAAATTGTGCTGGAGCTTGTGGCCCATGTCCTGGAACATAAAGACATAGGCTTTG TGATGGTGGATGCCAAGAAAGAAGCCAAGCTTGCCAAGAAACTGGGTTTTAATGAAGAAG GAAGCCTGTATATCCTTAAGGGCGATCGTACAATTGAGTTTGATGGCGAATTTGCAGCCG ATGTCTTGGTGGAGTTTCTCCTGGATCTCATTGAAGACCCAGTGGAGATCATCAATAGCA AACTGGAAGTCCAAGCTTTTGAGCGCATCGAGGACCACATCAAACTCATAGGCTTTTTCA AGAGTGAGGACTCAGAATATTACAAGGCTTTTGAAGAGGCAGCTGAACACTTCCAGCCTT ACATCAAATTTTTTGCTACCTTTGACAAAGGGGTTGCAAAGAAATTGTCCTCAAAGTTAT ATTGTGCTCAGTAGTTTAGTGTTAAGTGTGCATTATCGTGTTCTAATTTATTTTCTCAAT CTTCTAACACATGTGTAACACACTGCAAATTCTTTGAAAACAATCCTTTTGTGGAAGAGT AGCTAACTAACTGTCATTAAAGTTAATTTTGAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAAGAAGAGCAACACTTTGCCCAGATGAAGAGAACGCACCTGCTTGTGCTGGGGGTCT ACCTGCTGTCCTCCTGCGGGGCGGAGGAGGGGCTGAACTTCCCCACCTATGACGGCAAGG ACCGCGTGGTCAGTCTGACCGAGAAGAACTTCAAGCAGGTTTTGAAGAAATACGACTTGC TCTGCCTCTACTACCACGAGCCCGTGACTTCAGATAAAGTCTCGCAGAAGCAGTTCCAGC TGAAATAAATTGTGCTGGAGCTTGTGGCCCATGTCCTGGAACATAAAGACATAGGCTTTG TGATGGTGGATGCCAAGAAAGAAGCCAAGCTTGCCAAGAAACTGGGTTTTAATGAAGAAG GAAGCCTGTATATCCTTAAGGGCGATCGTACAATTGAGTTTGATGGCGAATTTGCAGCCG ATGTCTTGGTGGAGTTTCTCCTGGATCTCATTGAAGACCCAGTGGAGATCATCAATAGCA AACTGGAAGTCCAAGCTTTTGAGCGCATCGAGGACCACATCAAACTCATAGGCTTTTTCA AGAGTGAGGACTCAGAATATTACAAGGCTTTTGAAGAGGCAGCTGAACACTTCCAGCCTT ACATCAAATTTTTTGCTACCTTTGACAAAGGGGTTGCAAAGAAATTGTCCTCAAAGTTAT ATTGTGCTCAGTAGTTTAGTGTTAAGTGTGCATTATCGTGTTCTAATTTATTTTCTCAAT CTTCTAACACATGTGTAACACACTGCAAATTCTTTGAAAACAATCCTTTTGTGGAAGAGT AGCTAACTAACTGTCATTAAAGTTAATTTTGAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 47-166, + strand, RNAz p=0.88156 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 47-166, + strand, RNAz p=0.88156 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 10-260, gnl|bosTau2|chr3 (23727485-23727735) | |
| 10-260, gnl|Hg17|chr1 (116023224-116022971) | |
| 10-260, gnl|Mm7|chr3 (101880514-101880764) | |
| 345-445, gnl|bosTau2|chr3 (23756085-23756185) | |
| 345-445, gnl|canFam2|chr17 (56344749-56344915) | |
| 345-445, gnl|danRer3|chr3 (5454626-5454480) | |
| 345-445, gnl|dasNov1|scaffold_5457 (5030-4877) | |
| 345-445, gnl|echTel1|scaffold_295724 (85580-85745) | |
| 345-445, gnl|fr1|chrUn (114869498-114869612) | |
| 345-445, gnl|hg17|chr1 (115995375-115995541) | |
| 345-445, gnl|Hg17|chr1 (115995492-115995392) | |
| 345-445, gnl|loxAfr1|scaffold_2364 (88920-88754) | |
| 345-445, gnl|mm7|chr3 (101907073-101906918) | |
| 345-445, gnl|Mm7|chr3 (101906956-101907056) | |
| 345-445, gnl|monDom2|scaffold_82 (1346950-1347116) | |
| 345-445, gnl|oryCun1|scaffold_207904 (62080-61918) | |
| 345-445, gnl|panTro1|chr1 (115803195-115803361) | |
| 345-445, gnl|rheMac2|chr1 (118722817-118722983) | |
| 345-445, gnl|rn3|chr2 (197169013-197168859) | |
| 345-445, gnl|tetNig1|chr3 (3674696-3674835) | |
| 447-557, gnl|bosTau2|chr3 (23757784-23757894) | |
| 447-557, gnl|canFam2|chr17 (56343045-56343183) | |
| 447-557, gnl|danRer3|chr3 (5454820-5454696) | |
| 447-557, gnl|dasNov1|scaffold_5457 (6100-5958) | |
| 447-557, gnl|echTel1|scaffold_295724 (84025-84163) | |
| 447-557, gnl|fr1|chrUn (114869307-114869429) | |
| 447-557, gnl|galGal2|chr1 (74587775-74587637) | |
| 447-557, gnl|hg17|chr1 (115992880-115993012) | |
| 447-557, gnl|Hg17|chr1 (115992998-115992888) | |
| 447-557, gnl|loxAfr1|scaffold_2364 (90471-90333) | |
| 447-557, gnl|mm7|chr3 (101910876-101910728) | |
| 447-557, gnl|Mm7|chr3 (101910756-101910866) | |
| 447-557, gnl|monDom2|scaffold_82 (1343814-1343948) | |
| 447-557, gnl|oryCun1|scaffold_207904 (64183-64045) | |
| 447-557, gnl|panTro1|chr1 (115800689-115800821) | |
| 447-557, gnl|rheMac2|chr1 (118720357-118720499) | |
| 447-557, gnl|rn3|chr2 (197172333-197172201) | |
| 447-557, gnl|tetNig1|chr3 (3674477-3674601) | |
| 654-814, gnl|bosTau2|chr3 (23798207-23798374) | |
| 654-814, gnl|Hg17|chr1 (115954859-115954687) | |
| 654-814, gnl|Mm7|chr3 (101940246-101940405) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-260, gnl|bosTau2|chr3 (23727485-23727735) | |
| 10-260, gnl|Hg17|chr1 (116023224-116022971) | |
| 10-260, gnl|Mm7|chr3 (101880514-101880764) | |
| 345-445, gnl|bosTau2|chr3 (23756085-23756185) | |
| 345-445, gnl|canFam2|chr17 (56344749-56344915) | |
| 345-445, gnl|danRer3|chr3 (5454626-5454480) | |
| 345-445, gnl|dasNov1|scaffold_5457 (5030-4877) | |
| 345-445, gnl|echTel1|scaffold_295724 (85580-85745) | |
| 345-445, gnl|fr1|chrUn (114869498-114869612) | |
| 345-445, gnl|hg17|chr1 (115995375-115995541) | |
| 345-445, gnl|Hg17|chr1 (115995492-115995392) | |
| 345-445, gnl|loxAfr1|scaffold_2364 (88920-88754) | |
| 345-445, gnl|mm7|chr3 (101907073-101906918) | |
| 345-445, gnl|Mm7|chr3 (101906956-101907056) | |
| 345-445, gnl|monDom2|scaffold_82 (1346950-1347116) | |
| 345-445, gnl|oryCun1|scaffold_207904 (62080-61918) | |
| 345-445, gnl|panTro1|chr1 (115803195-115803361) | |
| 345-445, gnl|rheMac2|chr1 (118722817-118722983) | |
| 345-445, gnl|rn3|chr2 (197169013-197168859) | |
| 345-445, gnl|tetNig1|chr3 (3674696-3674835) | |
| 447-557, gnl|bosTau2|chr3 (23757784-23757894) | |
| 447-557, gnl|canFam2|chr17 (56343045-56343183) | |
| 447-557, gnl|danRer3|chr3 (5454820-5454696) | |
| 447-557, gnl|dasNov1|scaffold_5457 (6100-5958) | |
| 447-557, gnl|echTel1|scaffold_295724 (84025-84163) | |
| 447-557, gnl|fr1|chrUn (114869307-114869429) | |
| 447-557, gnl|galGal2|chr1 (74587775-74587637) | |
| 447-557, gnl|hg17|chr1 (115992880-115993012) | |
| 447-557, gnl|Hg17|chr1 (115992998-115992888) | |
| 447-557, gnl|loxAfr1|scaffold_2364 (90471-90333) | |
| 447-557, gnl|mm7|chr3 (101910876-101910728) | |
| 447-557, gnl|Mm7|chr3 (101910756-101910866) | |
| 447-557, gnl|monDom2|scaffold_82 (1343814-1343948) | |
| 447-557, gnl|oryCun1|scaffold_207904 (64183-64045) | |
| 447-557, gnl|panTro1|chr1 (115800689-115800821) | |
| 447-557, gnl|rheMac2|chr1 (118720357-118720499) | |
| 447-557, gnl|rn3|chr2 (197172333-197172201) | |
| 447-557, gnl|tetNig1|chr3 (3674477-3674601) | |
| 654-814, gnl|bosTau2|chr3 (23798207-23798374) | |
| 654-814, gnl|Hg17|chr1 (115954859-115954687) | |
| 654-814, gnl|Mm7|chr3 (101940246-101940405) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |