Non-Coding RNA Search

Ss1.1-Pig3-SRG8017J24.5

Sequence:


               
               CCCGGAGTGCCCACCGGAGGGTGGAAGAAGCCCTCAACCCTGTCATGGAGGGGTCTAGTG
AGCCGCAGCTGGACGCTAAGGCCAAGGTCACCAACCAGCTGATAGATTTTCAGTGGAAGC
TGGGAATGGCCGTGAGCTCGGACAGCTGCAGATCACTTAAGTATCCTTACGTTGCTGTGA
TGCTCAAAGTGGCGGATCATTCAGGCCAAGTGAAGAACAAGTCCTTTGAAATGACCATTC
CGCAGTTTCAGAATTTCTACAGACAGTTCAAGGAAATTGCTGCAATTATGGAAACTGTGT
GAAAGCTAATTACTTGGTTGATGAATTGCTACCATTCTAAAATCATGGACTTCACTTTCT
GCAACCACACTGCCTAAGGATCAAATGATATTTATTGAATGAAAGTTACACTTTTGGTTT
TCCATTTTTTTAAATAATCAAAATCAGACAAACAGGAATTACAAAGTTGTGATTGATGCA
CAACTTTGTGAATGTACCAAGAGCCACTGAAACCGAACACTTTAAAGGGTAAACTTTGTG
GTATGTGAATTATATTTTTAAATCATACAGTGGAATGATATTAAAAGCAACACAAATTTA
TGTATTAGGCCAATAGTTTTAAAAATTACAGGTAATGTTACCCTTTATAAATAAAACCTT
ATATAGAGTCCTTTATATATAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGAGTGCCCACCGGAGGGTGGAAGAAGCCCTCAACCCTGTCATGGAGGGGTCTAGTG
AGCCGCAGCTGGACGCTAAGGCCAAGGTCACCAACCAGCTGATAGATTTTCAGTGGAAGC
TGGGAATGGCCGTGAGCTCGGACAGCTGCAGATCACTTAAGTATCCTTACGTTGCTGTGA
TGCTCAAAGTGGCGGATCATTCAGGCCAAGTGAAGAACAAGTCCTTTGAAATGACCATTC
CGCAGTTTCAGAATTTCTACAGACAGTTCAAGGAAATTGCTGCAATTATGGAAACTGTGT
GAAAGCTAATTACTTGGTTGATGAATTGCTACCATTCTAAAATCATGGACTTCACTTTCT
GCAACCACACTGCCTAAGGATCAAATGATATTTATTGAATGAAAGTTACACTTTTGGTTT
TCCATTTTTTTAAATAATCAAAATCAGACAAACAGGAATTACAAAGTTGTGATTGATGCA
CAACTTTGTGAATGTACCAAGAGCCACTGAAACCGAACACTTTAAAGGGTAAACTTTGTG
GTATGTGAATTATATTTTTAAATCATACAGTGGAATGATATTAAAAGCAACACAAATTTA
TGTATTAGGCCAATAGTTTTAAAAATTACAGGTAATGTTACCCTTTATAAATAAAACCTT
ATATAGAGTCCTTTATATATAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33337954|gb|AAQ13599.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33337954|gb|AAQ13599.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               248-684, gnl|bosTau2|chr12 (26951030-26951468)
               

               
               248-684, gnl|Hg17|chr13 (74998780-74998356)
               

               
               248-684, gnl|Mm7|chr14 (96049569-96048996)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-684, gnl|bosTau2|chr12 (26951030-26951468)
               

               
               248-684, gnl|Hg17|chr13 (74998780-74998356)
               

               
               248-684, gnl|Mm7|chr14 (96049569-96048996)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ill (0.351185)
               

               
               cty (0.20816)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cty (0.20816)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)

	248-684, gnl\|bosTau2\|chr12 (26951030-26951468)
	248-684, gnl\|Hg17\|chr13 (74998780-74998356)
	248-684, gnl\|Mm7\|chr14 (96049569-96048996)

	ill (0.351185)
	cty (0.20816)
	cki (0.165235)
	liv (0.146284)
	cst (0.140036)
	nmm (0.132802)