Non-Coding RNA Search

Ss1.1-Pig3-SRG8017L03.3

Sequence:


               
               GAAGAAATGCCATTGATGCATTAGCAGGAGAGAATTCAGAAATTCCATGACTTGTGGCTA
ATAGCCCGTAGATAACAAAGGCTTTCTGGATCCCTGGGGAGCAGGGTTGCCTCCCTGCAG
AGTGCTCTTAAAAGTCTGGATGGCGCCTACTGACTGTACCGCGGAAAAATGCTCGGACTG
GATTAAAAGAAATAATGGGGAGCAGCTCACTCTCATGGTATTTTGATTGCTGCCAGTATA
TGTTCATAAGTGGTAACCATCTTCGTTTAGCTTAAAGTATATTCGTCGACAGTGTCGTGT
GTCCTGGGCGTTGCATAGAACAGAGACGTGCAGTCCCCACTTTCTTGGTACAGAGACAGC
CGTTGGACTGGATTCTCCTAAACTCTGAACATGCCACTTCTTTGGCTACGCTCAGTACTT
CTGGAAGCGAACCGTCACGGTAGATTCCAAAAGGCGAGAGGAAATGGTCGAAGGAAAAGA
GAAATTAAAAGAGACGTTCTCCTGTGGCGAAGCAGGTTAAGGATCCCGTGTCGTCACTGC
AGCGGCTTGGGTTGTTGCTGTGGTGCAGGGTTGATCACTGGTCTGGGAACTCCCACATGC
CACAGGAGCAGCTGGACAAAAATGGGGGGGGTTAATCTGACTTTTGAGTAATTACCTACC
AAGATTGCATTGGTAAAATCTTGACCGCAGGGCGGCTCGCCTCCGTCTGGAGCGTTGTCT
TTTTCTCTTCAGGAGGAACAACCAAAGGGGCGAGGGACGGAGGCACCTCGCAGGCAGCCG
CAGCAGACAGATCAACCTTGGCAGTCCGCGCAATGACAGATGTTGACGCCAGAGCAACCC
CAGAGTCTACGTTTATCTAGTATTTTTTAATCTCTTCGGAGCAGTCTTTGCTATGGTTGA
GTTTAGCCAAGAGATGAGATGGGAGAGAGAACAGATCTGAGCAAGACCCCTGAAGAGCTC
TCCCCTCTCTCTGGGCCCGTGCCAAGCCCTTTCTCTGAGCCTGTAAAGTTCTGAGACCCC
TTTCTCCGTCATCCCAAGGTGTCCAAGGCTGCATCTCTTCACCCCTCCCTTCCCCACCCC
ACCCGCCAAAGAAGTGCCCTAGGTTCTGGCCAAGATGTGCAATTTTGTCTGCCCTGTCTT
GCAGCTCTTCCCCCGGCTTCTCTTCGCTGGCACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAAATGCCATTGATGCATTAGCAGGAGAGAATTCAGAAATTCCATGACTTGTGGCTA
ATAGCCCGTAGATAACAAAGGCTTTCTGGATCCCTGGGGAGCAGGGTTGCCTCCCTGCAG
AGTGCTCTTAAAAGTCTGGATGGCGCCTACTGACTGTACCGCGGAAAAATGCTCGGACTG
GATTAAAAGAAATAATGGGGAGCAGCTCACTCTCATGGTATTTTGATTGCTGCCAGTATA
TGTTCATAAGTGGTAACCATCTTCGTTTAGCTTAAAGTATATTCGTCGACAGTGTCGTGT
GTCCTGGGCGTTGCATAGAACAGAGACGTGCAGTCCCCACTTTCTTGGTACAGAGACAGC
CGTTGGACTGGATTCTCCTAAACTCTGAACATGCCACTTCTTTGGCTACGCTCAGTACTT
CTGGAAGCGAACCGTCACGGTAGATTCCAAAAGGCGAGAGGAAATGGTCGAAGGAAAAGA
GAAATTAAAAGAGACGTTCTCCTGTGGCGAAGCAGGTTAAGGATCCCGTGTCGTCACTGC
AGCGGCTTGGGTTGTTGCTGTGGTGCAGGGTTGATCACTGGTCTGGGAACTCCCACATGC
CACAGGAGCAGCTGGACAAAAATGGGGGGGGTTAATCTGACTTTTGAGTAATTACCTACC
AAGATTGCATTGGTAAAATCTTGACCGCAGGGCGGCTCGCCTCCGTCTGGAGCGTTGTCT
TTTTCTCTTCAGGAGGAACAACCAAAGGGGCGAGGGACGGAGGCACCTCGCAGGCAGCCG
CAGCAGACAGATCAACCTTGGCAGTCCGCGCAATGACAGATGTTGACGCCAGAGCAACCC
CAGAGTCTACGTTTATCTAGTATTTTTTAATCTCTTCGGAGCAGTCTTTGCTATGGTTGA
GTTTAGCCAAGAGATGAGATGGGAGAGAGAACAGATCTGAGCAAGACCCCTGAAGAGCTC
TCCCCTCTCTCTGGGCCCGTGCCAAGCCCTTTCTCTGAGCCTGTAAAGTTCTGAGACCCC
TTTCTCCGTCATCCCAAGGTGTCCAAGGCTGCATCTCTTCACCCCTCCCTTCCCCACCCC
ACCCGCCAAAGAAGTGCCCTAGGTTCTGGCCAAGATGTGCAATTTTGTCTGCCCTGTCTT
GCAGCTCTTCCCCCGGCTTCTCTTCGCTGGCACTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-286, gnl|bosTau2|chr3 (25959788-25960072)
               

               
               2-286, gnl|Hg17|chr1 (109758053-109757781)
               

               
               2-286, gnl|Mm7|chr3 (108011090-108011373)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-286, gnl|bosTau2|chr3 (25959788-25960072)
               

               
               2-286, gnl|Hg17|chr1 (109758053-109757781)
               

               
               2-286, gnl|Mm7|chr3 (108011090-108011373)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               eje (0.0988338)

	2-286, gnl\|bosTau2\|chr3 (25959788-25960072)
	2-286, gnl\|Hg17\|chr1 (109758053-109757781)
	2-286, gnl\|Mm7\|chr3 (108011090-108011373)