Non-Coding RNA Search

Ss1.1-Pig3-SRG8017N21.5

Sequence:


               
               GCGGCCGCAGGAATTTCACTTTGTTTATAGTCCTGTCTCAAGTAGCCAAATGGGAGTTGA
ACTCTCAAACCTTCCTGGGAAAAGAGAACCCACATGAAGTGGTCATGGTGGCCATGGCAT
GGGTCTCACCCCTGTGGGCAGCCCTGTGAGGTCTTCACTGATGGCCTGTTCAACTTTTGA
GAGTGAATTTAATTTTGGGAAGCAGCCAGCTCTGCCAGAGTAGAAGGTAGACTCACCAGT
ACCATCTGTGATCTAAAGCCAGTACTTACTCTAAGATAAAAACCAGTCTTTTCCTGTGGA
TTGTGATGCTGAGGACAGTTGTTTAAATGTTTCCATCAGAAATGATGACTAAGCCTATAA
CACATCTCCACATAGGCCTTTGAAAGGTCACAGTCATTTGGATGTATAGGTTCTGTTATC
TTTGCTTTTAAACAATGTCACATGGAATGTAAAGGTTTTTAACACAGATTAAATTCATTG
TCACTTCTCTTTGATGGTCTGTTAATATTTACATATTTAGTAATTATAAAGGCTTATTCA
TTTTTGAGCCATATTTTATATGAAATATTTTTGTTTGAATCCAGTGTCAAGGAGAAAATG
TTACACATTACTTTGAAAACTAAACTTTGACCCAAAAAAGCTTTCATACAGGTAGAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCAGGAATTTCACTTTGTTTATAGTCCTGTCTCAAGTAGCCAAATGGGAGTTGA
ACTCTCAAACCTTCCTGGGAAAAGAGAACCCACATGAAGTGGTCATGGTGGCCATGGCAT
GGGTCTCACCCCTGTGGGCAGCCCTGTGAGGTCTTCACTGATGGCCTGTTCAACTTTTGA
GAGTGAATTTAATTTTGGGAAGCAGCCAGCTCTGCCAGAGTAGAAGGTAGACTCACCAGT
ACCATCTGTGATCTAAAGCCAGTACTTACTCTAAGATAAAAACCAGTCTTTTCCTGTGGA
TTGTGATGCTGAGGACAGTTGTTTAAATGTTTCCATCAGAAATGATGACTAAGCCTATAA
CACATCTCCACATAGGCCTTTGAAAGGTCACAGTCATTTGGATGTATAGGTTCTGTTATC
TTTGCTTTTAAACAATGTCACATGGAATGTAAAGGTTTTTAACACAGATTAAATTCATTG
TCACTTCTCTTTGATGGTCTGTTAATATTTACATATTTAGTAATTATAAAGGCTTATTCA
TTTTTGAGCCATATTTTATATGAAATATTTTTGTTTGAATCCAGTGTCAAGGAGAAAATG
TTACACATTACTTTGAAAACTAAACTTTGACCCAAAAAAGCTTTCATACAGGTAGAAATA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               11-180, gnl|bosTau2|chr24 (1442165-1442002)
               

               
               11-180, gnl|Mm7|chr18 (80404705-80404861)
               


               
               241-647, gnl|bosTau2|chr24 (1441980-1441580)
               

               
               241-647, gnl|Hg17|chr18 (76017340-76016887)
               

               
               241-647, gnl|Mm7|chr18 (80404885-80405284)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-180, gnl|bosTau2|chr24 (1442165-1442002)
               

               
               11-180, gnl|Mm7|chr18 (80404705-80404861)
               


               
               241-647, gnl|bosTau2|chr24 (1441980-1441580)
               

               
               241-647, gnl|Hg17|chr18 (76017340-76016887)
               

               
               241-647, gnl|Mm7|chr18 (80404885-80405284)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               ova (0.129132)

	11-180, gnl\|bosTau2\|chr24 (1442165-1442002)
	11-180, gnl\|Mm7\|chr18 (80404705-80404861)

	241-647, gnl\|bosTau2\|chr24 (1441980-1441580)
	241-647, gnl\|Hg17\|chr18 (76017340-76016887)
	241-647, gnl\|Mm7\|chr18 (80404885-80405284)