Non-Coding RNA Search

Ss1.1-Pig3-SRG8017O13.3

Sequence:


               
               TGGGGCCCCCACTGGGACTCCCGGGATGTCTCCAGCTCCCGGGGCACAGAGACCACTGGG
AGAGAAATCGGCTCCCCCTCTGATGGCAGAGGTGGGCAGGACCCGAAGGCTGACAACTTG
GTTTCCTTTGAATTTCCTTCCCCACCCTGACGCTTTGGTAGCCATGAAAATAGAGACGTA
GCTATTTTCAGGTGTTTGGAGTATGAAGGGTGGGCTGGGGCGGGAGGAGCCTCCAGGGCC
GTGGGCCGAGTCCAGGAGGAAACGAGGCTGCCTGGAGGTTCCCCTTGCCGCTCCAGGACA
GACACCCGGAAGGCTTGTGACACTTGTGGCCGGACCAGATTGCACTTAAGTGTTATGCTA
CTAATAATTGAAATAGACATGCCATTCCATTTGTAATTTAAAAAAGAAAAAAAAAATCTC
CAAGGAAAAAAACGACCAGATGTGGACTTGCATGCCGCGCTACAGGCTGTTCACAGGGGT
GATGGTATTATAGCGGAACGGCTGCTTGCTTTCTTTCTTTTTTAATTTTGTGAATTCTCA
AGTGCTGTTTTCCTGGAAGACAGTGCAGCAAACCAAGACTAATGGACAGTGCCATCCCTC
GCCAGCTTCTTCAGCTTCATTCTCCGTGGGTAGGTGGCGCCGGAGCTGCGGAGGGCTGCT
GGGCTTATCCTACCGCACGTCAGTTAACCTTCTGCTTAGTAGTTAGCGAGGTGTCCTGTT
GTACCACACCCGCCGCAGTCTTCACCTCCTTGTGTGAACACATTCCTGTGGGCAGCCAAT
AAAATGACGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGCCCCCACTGGGACTCCCGGGATGTCTCCAGCTCCCGGGGCACAGAGACCACTGGG
AGAGAAATCGGCTCCCCCTCTGATGGCAGAGGTGGGCAGGACCCGAAGGCTGACAACTTG
GTTTCCTTTGAATTTCCTTCCCCACCCTGACGCTTTGGTAGCCATGAAAATAGAGACGTA
GCTATTTTCAGGTGTTTGGAGTATGAAGGGTGGGCTGGGGCGGGAGGAGCCTCCAGGGCC
GTGGGCCGAGTCCAGGAGGAAACGAGGCTGCCTGGAGGTTCCCCTTGCCGCTCCAGGACA
GACACCCGGAAGGCTTGTGACACTTGTGGCCGGACCAGATTGCACTTAAGTGTTATGCTA
CTAATAATTGAAATAGACATGCCATTCCATTTGTAATTTAAAAAAGAAAAAAAAAATCTC
CAAGGAAAAAAACGACCAGATGTGGACTTGCATGCCGCGCTACAGGCTGTTCACAGGGGT
GATGGTATTATAGCGGAACGGCTGCTTGCTTTCTTTCTTTTTTAATTTTGTGAATTCTCA
AGTGCTGTTTTCCTGGAAGACAGTGCAGCAAACCAAGACTAATGGACAGTGCCATCCCTC
GCCAGCTTCTTCAGCTTCATTCTCCGTGGGTAGGTGGCGCCGGAGCTGCGGAGGGCTGCT
GGGCTTATCCTACCGCACGTCAGTTAACCTTCTGCTTAGTAGTTAGCGAGGTGTCCTGTT
GTACCACACCCGCCGCAGTCTTCACCTCCTTGTGTGAACACATTCCTGTGGGCAGCCAAT
AAAATGACGTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               117-305, + strand, RNAz p=0.97723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-305, + strand, RNAz p=0.97723

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               79-792, gnl|bosTau2|chr9 (57795413-57796135)
               

               
               79-792, gnl|Hg17|chr6 (158064705-158065372)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-792, gnl|bosTau2|chr9 (57795413-57796135)
               

               
               79-792, gnl|Hg17|chr6 (158064705-158065372)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               cli (0.152812)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               cli (0.152812)

	79-792, gnl\|bosTau2\|chr9 (57795413-57796135)
	79-792, gnl\|Hg17\|chr6 (158064705-158065372)