Non-Coding RNA Search

Ss1.1-Pig3-SRG8017P14.3

Sequence:


               
               GAAGTTCTCTTCAAACTGCAGTAGGTCCAGGGGCCAGTCCTAGTTGGAGCTGAGGAGGGG
TGATTATGTGCTGACCTTGGCCATGGATTGAAAGTGTGGCAGTTTCTTTTTTGACTTTTA
AGTGTTGGATTTGCTGTTTTAAGCATTTGTACATACATATGAGAAGTCTGAGGAGTAGCG
AGTTCTGGGGACCTTTTCACCCCCGGCATTAGCATCTTCAACTTCTCTTGCCCACGTTGA
CCTGGCCCTGGCCCCTATTAAGGATAACGAGGAATGATGTGTCAGGTGCAGGGGCAGGGA
TTCTGCTGCTTCTCACCCTCACCCTGGCTTGCAGGTTGTTCCTGCCCCAAAGGTATTTTT
GTGTCTAGTGTTAGCTTGGGTCTTTCCTTCACTGGTCCTTCACCCTGGGTTTTAAAAAAG
AAGGCTTCTCTCTTCTGATGTTTTTAGTTAAGTCCTCTTCCACATAGTCATATGGAAATG
GTAATATGTTGGAAGTCTGCTTAAAAAAACAAAAAGTTGTCTGATTTTTGAAGAGGGAGG
TTAGGTTTTTATCATTCAAATTTCCTTCTATGGTTCTGTAATTCCATCACAGTATTTTTT
TAAAATGACTCAGGTGTTATGAGGATAAATTAGAAGAGAAAATAAGTTATGTGGACTGTA
AATGTTTTTATTTAAGATTCTATTAAATAAAGCTATATTCTGTAACTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTTCTCTTCAAACTGCAGTAGGTCCAGGGGCCAGTCCTAGTTGGAGCTGAGGAGGGG
TGATTATGTGCTGACCTTGGCCATGGATTGAAAGTGTGGCAGTTTCTTTTTTGACTTTTA
AGTGTTGGATTTGCTGTTTTAAGCATTTGTACATACATATGAGAAGTCTGAGGAGTAGCG
AGTTCTGGGGACCTTTTCACCCCCGGCATTAGCATCTTCAACTTCTCTTGCCCACGTTGA
CCTGGCCCTGGCCCCTATTAAGGATAACGAGGAATGATGTGTCAGGTGCAGGGGCAGGGA
TTCTGCTGCTTCTCACCCTCACCCTGGCTTGCAGGTTGTTCCTGCCCCAAAGGTATTTTT
GTGTCTAGTGTTAGCTTGGGTCTTTCCTTCACTGGTCCTTCACCCTGGGTTTTAAAAAAG
AAGGCTTCTCTCTTCTGATGTTTTTAGTTAAGTCCTCTTCCACATAGTCATATGGAAATG
GTAATATGTTGGAAGTCTGCTTAAAAAAACAAAAAGTTGTCTGATTTTTGAAGAGGGAGG
TTAGGTTTTTATCATTCAAATTTCCTTCTATGGTTCTGTAATTCCATCACAGTATTTTTT
TAAAATGACTCAGGTGTTATGAGGATAAATTAGAAGAGAAAATAAGTTATGTGGACTGTA
AATGTTTTTATTTAAGATTCTATTAAATAAAGCTATATTCTGTAACTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               510-716, gnl|bosTau2|chr11 (42561953-42562162)
               

               
               510-716, gnl|Hg17|chr8 (22335940-22336133)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               510-716, gnl|bosTau2|chr11 (42561953-42562162)
               

               
               510-716, gnl|Hg17|chr8 (22335940-22336133)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	510-716, gnl\|bosTau2\|chr11 (42561953-42562162)
	510-716, gnl\|Hg17\|chr8 (22335940-22336133)

	hea (0.204499)
	aor (0.195274)
	cmu (0.186393)
	sto (0.179824)
	duo (0.172801)
	nje (0.16592)
	cli (0.152812)
	che (0.136314)
	ute (0.132784)
	ebs (0.118301)
	spc (0.113366)
	eje (0.0988338)