Non-Coding RNA Search

Ss1.1-Pig3-SRG8018B18.5

Sequence:


               
               ACAGCTAGGCTTCTGACCCAACCCCAAGTAGAAAAGAAAAGGAAATAATGGAGCATTATT
TTTCCACGTTATTATTTAGGGCATCAGGTTCTTGGTGTGAAACACTATAATTAAGTGGGA
TACCTTACTCTTCATACCTAGGACTCTTAGCACATTTCTTTGAGATTTGTAAATATAAAT
GTAAAGCTCATTATTGTTTATATGCTAAAAAAAAAAAACTTTCCAAAATAAGACTGAAGT
TCAGAATACCACATTAAAGTTTATTTATATAGCCTTGACAACTTGAGAGCATCTCTTAAA
ATTCTAGCATAAGGACATCTTAAAATTGCATGAGGTTCAAAGCCCACAAGCAAAATTATT
AATTTAAAACCGTAATGTAAATTGCAAATTTTAAAATTTATTTTTAACTCTTATTTATCA
TCTGCTGTAATGTATGTACATAAGTTTCTGTGGCTTAATTAATAGCAATTAATGTTATTA
CCTGACAGGTTTTTGTGGTGTGAATAATTAATGTTATTATTTGATTGTTATACCATATGT
GCCCATTAAATTTTTTTAATTGCGAAATACTTCAAATATACATAATAATACTATAAATGC
CCTTGTACTCTTCATAAACTATTTTGCCATATTTGCTTCTGATTTTTAAAGAAATAAAAT
GTTACTCTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCTAGGCTTCTGACCCAACCCCAAGTAGAAAAGAAAAGGAAATAATGGAGCATTATT
TTTCCACGTTATTATTTAGGGCATCAGGTTCTTGGTGTGAAACACTATAATTAAGTGGGA
TACCTTACTCTTCATACCTAGGACTCTTAGCACATTTCTTTGAGATTTGTAAATATAAAT
GTAAAGCTCATTATTGTTTATATGCTAAAAAAAAAAAACTTTCCAAAATAAGACTGAAGT
TCAGAATACCACATTAAAGTTTATTTATATAGCCTTGACAACTTGAGAGCATCTCTTAAA
ATTCTAGCATAAGGACATCTTAAAATTGCATGAGGTTCAAAGCCCACAAGCAAAATTATT
AATTTAAAACCGTAATGTAAATTGCAAATTTTAAAATTTATTTTTAACTCTTATTTATCA
TCTGCTGTAATGTATGTACATAAGTTTCTGTGGCTTAATTAATAGCAATTAATGTTATTA
CCTGACAGGTTTTTGTGGTGTGAATAATTAATGTTATTATTTGATTGTTATACCATATGT
GCCCATTAAATTTTTTTAATTGCGAAATACTTCAAATATACATAATAATACTATAAATGC
CCTTGTACTCTTCATAAACTATTTTGCCATATTTGCTTCTGATTTTTAAAGAAATAAAAT
GTTACTCTTTTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-672, gnl|bosTau2|chr1 (6616953-6617606)
               

               
               9-672, gnl|Hg17|chr21 (29222995-29222344)
               

               
               9-672, gnl|Mm7|chr16 (87419189-87418601)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-672, gnl|bosTau2|chr1 (6616953-6617606)
               

               
               9-672, gnl|Hg17|chr21 (29222995-29222344)
               

               
               9-672, gnl|Mm7|chr16 (87419189-87418601)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	9-672, gnl\|bosTau2\|chr1 (6616953-6617606)
	9-672, gnl\|Hg17\|chr21 (29222995-29222344)
	9-672, gnl\|Mm7\|chr16 (87419189-87418601)