Non-Coding RNA Search

Ss1.1-Pig3-SRG8018D03.3

Sequence:


               
               AAAAAAAAAAATTAGTTCTTTCTAAATAATTTTCTTTTCAGGGCTTGACATGACCCAGAA
GTTAAAACAATATGCTGATGCTTCATTCTCTGTGACACAGTTACATGTGGATACCCAGTT
TCCCAGTAGAAAAAGGACAAGCGCTAATATTGATGCCAACACAGCATTATATCAATTACT
GTGAGCAGACAACCTGACAAACAGATGTATATTTATCCTATTAAAATTAAATTAGCTCTG
ATGATAGTTTTATAATAAGATTGTATTATATATACCATGTTGGATAATCCCATCATTTAA
TATACAGTAAAGGAAGATTCTGGCTACATTTTTTAATACAATACCTGGATTTGGTACAGG
CTATATTTCTATGAAACCCATGAGCAAATGTAGCAACATATTGAAATTGCTTCTTTCTCT
ATGGAGTTTTCTTGGTACGGGATAGTCAGAGTAACCCTAAAACTTTCGTACTGTCAATGA
GTCATGGACAAAAAATAAAGCACTTTCAAATTATACCAGTGGAAGATGATGGTGAAATGT
TTCACACCTTGGATGATGGCCACACGAGATTTACAGATCTAATCCAGCTGGTGGAGTTCT
ATCAACTCAATAAGGGAGTTCTTCCTTGCAAGCTGAAACATTATTGTGCTAGGATTGCAC
TTTAGCCAAACCAGAAGTGACTTGTTAAACTGTTGAATAAAAAGGACTCAAGAAAAAAAA
AAAGACCATGAATAAGGGTGAAAGCATTGCCGTGGTAAAAAGAATCTGTTTCACCAAAAG
TTACAAAAAATAGTTTGCATATTACAAATAAGATTTGGATTAATATTACTTTCATCATTT
AAAAATTCATTAGTTAAAATTAAACCTCAGAAAAAAAAATGATCTGCTGTGTTCTTGTGT
GATTTTACACTACCGTAATATTTTCTTCAAATATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAATTAGTTCTTTCTAAATAATTTTCTTTTCAGGGCTTGACATGACCCAGAA
GTTAAAACAATATGCTGATGCTTCATTCTCTGTGACACAGTTACATGTGGATACCCAGTT
TCCCAGTAGAAAAAGGACAAGCGCTAATATTGATGCCAACACAGCATTATATCAATTACT
GTGAGCAGACAACCTGACAAACAGATGTATATTTATCCTATTAAAATTAAATTAGCTCTG
ATGATAGTTTTATAATAAGATTGTATTATATATACCATGTTGGATAATCCCATCATTTAA
TATACAGTAAAGGAAGATTCTGGCTACATTTTTTAATACAATACCTGGATTTGGTACAGG
CTATATTTCTATGAAACCCATGAGCAAATGTAGCAACATATTGAAATTGCTTCTTTCTCT
ATGGAGTTTTCTTGGTACGGGATAGTCAGAGTAACCCTAAAACTTTCGTACTGTCAATGA
GTCATGGACAAAAAATAAAGCACTTTCAAATTATACCAGTGGAAGATGATGGTGAAATGT
TTCACACCTTGGATGATGGCCACACGAGATTTACAGATCTAATCCAGCTGGTGGAGTTCT
ATCAACTCAATAAGGGAGTTCTTCCTTGCAAGCTGAAACATTATTGTGCTAGGATTGCAC
TTTAGCCAAACCAGAAGTGACTTGTTAAACTGTTGAATAAAAAGGACTCAAGAAAAAAAA
AAAGACCATGAATAAGGGTGAAAGCATTGCCGTGGTAAAAAGAATCTGTTTCACCAAAAG
TTACAAAAAATAGTTTGCATATTACAAATAAGATTTGGATTAATATTACTTTCATCATTT
AAAAATTCATTAGTTAAAATTAAACCTCAGAAAAAAAAATGATCTGCTGTGTTCTTGTGT
GATTTTACACTACCGTAATATTTTCTTCAAATATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2130619|gb|AAC19749.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2130619|gb|AAC19749.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               519-934, gnl|bosTau2|chr2 (24245567-24245155)
               

               
               519-934, gnl|Hg17|chr2 (165175199-165174777)
               

               
               519-934, gnl|Mm7|chr2 (64843402-64842975)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               519-934, gnl|bosTau2|chr2 (24245567-24245155)
               

               
               519-934, gnl|Hg17|chr2 (165175199-165174777)
               

               
               519-934, gnl|Mm7|chr2 (64843402-64842975)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ova (0.645661)
               

               
               sug (0.254582)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.645661)
               

               
               sug (0.254582)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	519-934, gnl\|bosTau2\|chr2 (24245567-24245155)
	519-934, gnl\|Hg17\|chr2 (165175199-165174777)
	519-934, gnl\|Mm7\|chr2 (64843402-64842975)

	ova (0.645661)
	sug (0.254582)
	lun (0.150489)
	lin (0.145603)
	kid (0.129735)
	tra (0.123092)