Ss1.1-Pig3-SRG8018E01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCTCCGAATCTCTGTGGATGATGAAGCCCAGGTACAGAAGGTGAAGGAGCTGGAGGAC CTGGAGCACTTGCAGCTGGACTTCTGGCGGGGCCCTGCCAGGCCAGGCTTCCCCATCGAC GTCCGAGTGCCCTTCCCCAGCATCCAGGCTGTCAAAGTCTTCCTGGAGGCCCATGGCATC AGATATACAATCATGATCGAGGATGTGCAGTTGCTGCTGGATGAGGAGCAGGAGCAGATG TTCGCTTCCCAGGGCCGAGCCCGCACCACCAGCACCTTTAACTACGCCACCTACCACACC CTGGAGGAGATCTATGACTTCATGGACATACTGGTGGCCGAGCACCCACAGCTTGTCAGC AAGCTCCAGATTGGCAGCAGCTATGAAGGCCGCCCCATCTACGTGCTGAAGTTCAGCACT GGGGGAAACAACCGTCCGGCTATCTGGATTGACACGGGCATCCATTCCCGGGAGTGGGTC ACCCAGGCCAGTGGGGTCTGGTTTGCAAAGAAGATCACTGAAGACTATGGCCAGGACCCG GCTTTCACCGCCATTCTTGACAACTTGGACATCTTCCTGGAGATTGTCACTAACCCTGAC GGTTTTGCCTTTACCCACAGTGAGAATCGAATGTGGCGCAAGACTCGATCCCGCACGTCG GGCTCTTTCTGTGTTGGGGTGGACCCCAACAGGAACTGGGATGCCGGCTTTGGGGGGGCA GGAGCCAGCAGCAACCCATGCTCGGAAACTTACCATGGCAAGTTTCCCAATTCTGAAGTG GAAGTCAAGTCCATCGTGGACTTTGTGAACGACCATGGAAACATCAAGGCCTTCATCTCC ATCCACAGCTACTCCCAGCTCCTCCTCTATCCCTATGGCTACAAAACAGAAGCACCTGCG GACAAGGATGAGCTGGATCAGATATCTAAGTCTGCTGTTGCCGCCCTGACCTCTCTGTAT GGGACCAAGTTCCAGTATGGCAGCATCATCACTACAATTTACCAAGCCAGTGGAGGCACC ATTGACTGGACGTACAACCAGGGCATCAAGTACTCCTTCTCCTTCGAGCTCCGGGACACT GGGCGCTATGGCTTCCTGTTGCCAGCCTCCCAGATCATCCCCACAGCCCAGGAGACATGG CTGGCACTTCTGACCATCATGGAGCACACTCTGAATCACCCCTACTGACCTGGCTCTCCT CCTCTCCAGCCCCGTGCAGGCAACCAAATAAAGTTTGAGTGTACATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCTCCGAATCTCTGTGGATGATGAAGCCCAGGTACAGAAGGTGAAGGAGCTGGAGGAC CTGGAGCACTTGCAGCTGGACTTCTGGCGGGGCCCTGCCAGGCCAGGCTTCCCCATCGAC GTCCGAGTGCCCTTCCCCAGCATCCAGGCTGTCAAAGTCTTCCTGGAGGCCCATGGCATC AGATATACAATCATGATCGAGGATGTGCAGTTGCTGCTGGATGAGGAGCAGGAGCAGATG TTCGCTTCCCAGGGCCGAGCCCGCACCACCAGCACCTTTAACTACGCCACCTACCACACC CTGGAGGAGATCTATGACTTCATGGACATACTGGTGGCCGAGCACCCACAGCTTGTCAGC AAGCTCCAGATTGGCAGCAGCTATGAAGGCCGCCCCATCTACGTGCTGAAGTTCAGCACT GGGGGAAACAACCGTCCGGCTATCTGGATTGACACGGGCATCCATTCCCGGGAGTGGGTC ACCCAGGCCAGTGGGGTCTGGTTTGCAAAGAAGATCACTGAAGACTATGGCCAGGACCCG GCTTTCACCGCCATTCTTGACAACTTGGACATCTTCCTGGAGATTGTCACTAACCCTGAC GGTTTTGCCTTTACCCACAGTGAGAATCGAATGTGGCGCAAGACTCGATCCCGCACGTCG GGCTCTTTCTGTGTTGGGGTGGACCCCAACAGGAACTGGGATGCCGGCTTTGGGGGGGCA GGAGCCAGCAGCAACCCATGCTCGGAAACTTACCATGGCAAGTTTCCCAATTCTGAAGTG GAAGTCAAGTCCATCGTGGACTTTGTGAACGACCATGGAAACATCAAGGCCTTCATCTCC ATCCACAGCTACTCCCAGCTCCTCCTCTATCCCTATGGCTACAAAACAGAAGCACCTGCG GACAAGGATGAGCTGGATCAGATATCTAAGTCTGCTGTTGCCGCCCTGACCTCTCTGTAT GGGACCAAGTTCCAGTATGGCAGCATCATCACTACAATTTACCAAGCCAGTGGAGGCACC ATTGACTGGACGTACAACCAGGGCATCAAGTACTCCTTCTCCTTCGAGCTCCGGGACACT GGGCGCTATGGCTTCCTGTTGCCAGCCTCCCAGATCATCCCCACAGCCCAGGAGACATGG CTGGCACTTCTGACCATCATGGAGCACACTCTGAATCACCCCTACTGACCTGGCTCTCCT CCTCTCCAGCCCCGTGCAGGCAACCAAATAAAGTTTGAGTGTACATGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 717-835, - strand, RNAz p=0.845774 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 717-835, - strand, RNAz p=0.845774 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 73-309, gnl|bosTau2|chr4 (50713644-50713408) | |
| 73-309, gnl|Hg17|chr7 (129615419-129615655) | |
| 73-309, gnl|Mm7|chr6 (30572651-30572887) | |
| 410-513, gnl|bosTau2|chr4 (50712327-50712224) | |
| 410-513, gnl|canFam2|chr14 (9519517-9519398) | |
| 410-513, gnl|danRer3|chrUn (167169152-167169271) | |
| 410-513, gnl|dasNov1|scaffold_39945 (10016-10135) | |
| 410-513, gnl|echTel1|scaffold_312905 (107990-107872) | |
| 410-513, gnl|fr1|chrUn (38064385-38064264) | |
| 410-513, gnl|galGal2|chr14 (14845759-14845874) | |
| 410-513, gnl|hg17|chr7 (129617173-129617292) | |
| 410-513, gnl|Hg17|chr7 (129617181-129617284) | |
| 410-513, gnl|loxAfr1|scaffold_4096 (79772-79653) | |
| 410-513, gnl|mm7|chr6 (30573628-30573747) | |
| 410-513, gnl|Mm7|chr6 (30573636-30573739) | |
| 410-513, gnl|monDom2|scaffold_22 (14120919-14120811) | |
| 410-513, gnl|oryCun1|scaffold_89645 (4667-4548) | |
| 410-513, gnl|panTro1|chr6 (132090676-132090795) | |
| 410-513, gnl|rheMac2|chr3 (167768004-167768123) | |
| 410-513, gnl|rn3|chr4 (57827683-57827802) | |
| 410-513, gnl|tetNig1|chr13 (10593217-10593105) | |
| 608-714, gnl|bosTau2|chr4 (50711475-50711369) | |
| 608-714, gnl|canFam2|chr14 (9518463-9518358) | |
| 608-714, gnl|dasNov1|scaffold_3310 (827-939) | |
| 608-714, gnl|echTel1|scaffold_125086 (984-888) | |
| 608-714, gnl|galGal2|chr14 (14846385-14846489) | |
| 608-714, gnl|hg17|chr7 (129618310-129618422) | |
| 608-714, gnl|Hg17|chr7 (129618311-129618417) | |
| 608-714, gnl|loxAfr1|scaffold_1808 (41805-41710) | |
| 608-714, gnl|mm7|chr6 (30574426-30574538) | |
| 608-714, gnl|Mm7|chr6 (30574427-30574533) | |
| 608-714, gnl|oryCun1|scaffold_89645 (4062-3964) | |
| 608-714, gnl|panTro1|chr6 (132091813-132091924) | |
| 608-714, gnl|rheMac2|chr3 (167769138-167769250) | |
| 608-714, gnl|rn3|chr4 (57828455-57828567) | |
| 608-714, gnl|tetNig1|chr13 (10592798-10592697) | |
| 717-936, gnl|bosTau2|chr4 (50710857-50710639) | |
| 717-936, gnl|Hg17|chr7 (129618939-129619156) | |
| 717-936, gnl|Mm7|chr6 (30575009-30575225) | |
| 1001-1248, gnl|bosTau2|chr4 (50708469-50708206) | |
| 1001-1248, gnl|Hg17|chr7 (129621616-129621879) | |
| 1001-1248, gnl|Mm7|chr6 (30577245-30577503) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-309, gnl|bosTau2|chr4 (50713644-50713408) | |
| 73-309, gnl|Hg17|chr7 (129615419-129615655) | |
| 73-309, gnl|Mm7|chr6 (30572651-30572887) | |
| 410-513, gnl|bosTau2|chr4 (50712327-50712224) | |
| 410-513, gnl|canFam2|chr14 (9519517-9519398) | |
| 410-513, gnl|danRer3|chrUn (167169152-167169271) | |
| 410-513, gnl|dasNov1|scaffold_39945 (10016-10135) | |
| 410-513, gnl|echTel1|scaffold_312905 (107990-107872) | |
| 410-513, gnl|fr1|chrUn (38064385-38064264) | |
| 410-513, gnl|galGal2|chr14 (14845759-14845874) | |
| 410-513, gnl|hg17|chr7 (129617173-129617292) | |
| 410-513, gnl|Hg17|chr7 (129617181-129617284) | |
| 410-513, gnl|loxAfr1|scaffold_4096 (79772-79653) | |
| 410-513, gnl|mm7|chr6 (30573628-30573747) | |
| 410-513, gnl|Mm7|chr6 (30573636-30573739) | |
| 410-513, gnl|monDom2|scaffold_22 (14120919-14120811) | |
| 410-513, gnl|oryCun1|scaffold_89645 (4667-4548) | |
| 410-513, gnl|panTro1|chr6 (132090676-132090795) | |
| 410-513, gnl|rheMac2|chr3 (167768004-167768123) | |
| 410-513, gnl|rn3|chr4 (57827683-57827802) | |
| 410-513, gnl|tetNig1|chr13 (10593217-10593105) | |
| 608-714, gnl|bosTau2|chr4 (50711475-50711369) | |
| 608-714, gnl|canFam2|chr14 (9518463-9518358) | |
| 608-714, gnl|dasNov1|scaffold_3310 (827-939) | |
| 608-714, gnl|echTel1|scaffold_125086 (984-888) | |
| 608-714, gnl|galGal2|chr14 (14846385-14846489) | |
| 608-714, gnl|hg17|chr7 (129618310-129618422) | |
| 608-714, gnl|Hg17|chr7 (129618311-129618417) | |
| 608-714, gnl|loxAfr1|scaffold_1808 (41805-41710) | |
| 608-714, gnl|mm7|chr6 (30574426-30574538) | |
| 608-714, gnl|Mm7|chr6 (30574427-30574533) | |
| 608-714, gnl|oryCun1|scaffold_89645 (4062-3964) | |
| 608-714, gnl|panTro1|chr6 (132091813-132091924) | |
| 608-714, gnl|rheMac2|chr3 (167769138-167769250) | |
| 608-714, gnl|rn3|chr4 (57828455-57828567) | |
| 608-714, gnl|tetNig1|chr13 (10592798-10592697) | |
| 717-936, gnl|bosTau2|chr4 (50710857-50710639) | |
| 717-936, gnl|Hg17|chr7 (129618939-129619156) | |
| 717-936, gnl|Mm7|chr6 (30575009-30575225) | |
| 1001-1248, gnl|bosTau2|chr4 (50708469-50708206) | |
| 1001-1248, gnl|Hg17|chr7 (129621616-129621879) | |
| 1001-1248, gnl|Mm7|chr6 (30577245-30577503) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (1.1798) | |
| eru (0.120048) |