Non-Coding RNA Search

Ss1.1-Pig3-SRG8018E11.3

Sequence:


               
               CCGCCATCTCAGGTCTCTTGGCCTCATCAGGGCCCACCGGAAAGAGCTGACGCCCGGGTC
CTGTAATCCTTATGGGTGACCAACCTTGTGCCTCCGGGAGATCCACACTCCCACCTGGAA
ACACGCGGGAAACCAAGCCGCCAAAAAAGCGCTGTCTTTTAGCTCCAAGGTGGGATTATC
CAGAAGGAACTCCTAACGGAGGTAGTACCCCTCTCCCTTCCGCACCTACTCCTGCATCAC
CGGGCCTGAAGTCGCACCCACCTCCTCCGGAGAAGTAGTACAACACACTTCTCCCACCCC
AAACCAGTCTTTGAGGGATTGCAGTATGACTCTATTTCCTTGGTATATGTGCTGCCGAAG
CAAGCACCTGACTCTGTTTCCTTAGTGCATTCATAAAATAGTTCACTCAGTGAAGACAAT
GAAGATTATTGACAATGCTACCCTGCTTTTTCTGATGTTCTACACCAGGAAGTTGTGATT
TTTAAGTGCTATGATACAATAAGCAAAATTTCATCTCCTGAATTTGGATGAATTATGGGA
CATGACCAATATCAGGCCATAGACCTCTAAGATTGAAGACCCAGGCCTGGATCATGGTGA
ACTCACCAAAGCAAATAATGCCTGTGAGATGGTCCTGCAGCAGACAATTAAATTTCTCTT
TGGGTGATACTCATTCCTTGATGTATAACTTTGAATTCCTGTAATTCCATTAAGGTTCCA
ATAAAATTCTTTTTTCTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCATCTCAGGTCTCTTGGCCTCATCAGGGCCCACCGGAAAGAGCTGACGCCCGGGTC
CTGTAATCCTTATGGGTGACCAACCTTGTGCCTCCGGGAGATCCACACTCCCACCTGGAA
ACACGCGGGAAACCAAGCCGCCAAAAAAGCGCTGTCTTTTAGCTCCAAGGTGGGATTATC
CAGAAGGAACTCCTAACGGAGGTAGTACCCCTCTCCCTTCCGCACCTACTCCTGCATCAC
CGGGCCTGAAGTCGCACCCACCTCCTCCGGAGAAGTAGTACAACACACTTCTCCCACCCC
AAACCAGTCTTTGAGGGATTGCAGTATGACTCTATTTCCTTGGTATATGTGCTGCCGAAG
CAAGCACCTGACTCTGTTTCCTTAGTGCATTCATAAAATAGTTCACTCAGTGAAGACAAT
GAAGATTATTGACAATGCTACCCTGCTTTTTCTGATGTTCTACACCAGGAAGTTGTGATT
TTTAAGTGCTATGATACAATAAGCAAAATTTCATCTCCTGAATTTGGATGAATTATGGGA
CATGACCAATATCAGGCCATAGACCTCTAAGATTGAAGACCCAGGCCTGGATCATGGTGA
ACTCACCAAAGCAAATAATGCCTGTGAGATGGTCCTGCAGCAGACAATTAAATTTCTCTT
TGGGTGATACTCATTCCTTGATGTATAACTTTGAATTCCTGTAATTCCATTAAGGTTCCA
ATAAAATTCTTTTTTCTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5RDV1_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5RDV1_PONPY

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-239, + strand, RNAz p=0.867488
               

               
               449-635, - strand, RNAz p=0.774621

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.867488
               

               
               449-635, - strand, RNAz p=0.774621

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-348, gnl|bosTau2|chr18 (38682929-38682592)
               

               
               1-348, gnl|Hg17|chrX (56638737-56641557)
               

               
               1-348, gnl|Mm7|chrX (148482310-148484421)
               


               
               369-741, gnl|bosTau2|chr18 (38682613-38682236)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr18 (38682929-38682592)
               

               
               1-348, gnl|Hg17|chrX (56638737-56641557)
               

               
               1-348, gnl|Mm7|chrX (148482310-148484421)
               


               
               369-741, gnl|bosTau2|chr18 (38682613-38682236)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	120-239, + strand, RNAz p=0.867488
	449-635, - strand, RNAz p=0.774621

	1-348, gnl\|bosTau2\|chr18 (38682929-38682592)
	1-348, gnl\|Hg17\|chrX (56638737-56641557)
	1-348, gnl\|Mm7\|chrX (148482310-148484421)

	369-741, gnl\|bosTau2\|chr18 (38682613-38682236)