Ss1.1-Pig3-SRG8018E23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCATTCAAAGATAAGACAGTAAATCTTTAGTGCCTTTAGAACAAACACTGAAAACACA CACAAGCTCTCCTCCTAACCTCTTCATAATCGAGTGAAAGGGAAGGACTGTGTTACTCAG GAATAAGATACTGACCCCTGAGTGTGGCTACTAACTGAAATTTAAACACAGGTGTTCAGG GGACAAGGCGAAATGAGTAGACCAGAGCTAGTCTTCTGGTTGGTGTATTAAATCTCTGCA GTTTCCTAGAGGTAAACATATTCATTGTGGGGACATGAGCTTTCCCATACCTCAGTTGTC CAGGATAATGGGACGGGGTGTTGATAAGCAACTCAAGTGTATTACTGTCCTCTAGACAGC TAAACCTTGGTTTGTCACACGATATAAAATAAAGCACCAGAACCAGTAACAGAGACTGGC CTGTTTAGACCTTATGTCATGTTGCTGGTGACACACAGCAGAGGCACCTGTGCAACATAT GCAGGAGATACAACAGTCTCTGGGAAATAACAGAATGTTACCATGTGGGTTTTTAAAATA TAGTATTTGCATGTCATTGCTGTAATGTGCATTTTTGAGGCAATCGTGAAACTGGTGTGT GATTGTTGGTGTGCTCTGTTGTAAATTCAAAGAGCTTGTTTGAGTTTATTTTTTTTTTTT TACTTATTGTTTTCAGAGTGTCTATTTTGAATTAAAACTTGTTACACCCACTGCAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCATTCAAAGATAAGACAGTAAATCTTTAGTGCCTTTAGAACAAACACTGAAAACACA CACAAGCTCTCCTCCTAACCTCTTCATAATCGAGTGAAAGGGAAGGACTGTGTTACTCAG GAATAAGATACTGACCCCTGAGTGTGGCTACTAACTGAAATTTAAACACAGGTGTTCAGG GGACAAGGCGAAATGAGTAGACCAGAGCTAGTCTTCTGGTTGGTGTATTAAATCTCTGCA GTTTCCTAGAGGTAAACATATTCATTGTGGGGACATGAGCTTTCCCATACCTCAGTTGTC CAGGATAATGGGACGGGGTGTTGATAAGCAACTCAAGTGTATTACTGTCCTCTAGACAGC TAAACCTTGGTTTGTCACACGATATAAAATAAAGCACCAGAACCAGTAACAGAGACTGGC CTGTTTAGACCTTATGTCATGTTGCTGGTGACACACAGCAGAGGCACCTGTGCAACATAT GCAGGAGATACAACAGTCTCTGGGAAATAACAGAATGTTACCATGTGGGTTTTTAAAATA TAGTATTTGCATGTCATTGCTGTAATGTGCATTTTTGAGGCAATCGTGAAACTGGTGTGT GATTGTTGGTGTGCTCTGTTGTAAATTCAAAGAGCTTGTTTGAGTTTATTTTTTTTTTTT TACTTATTGTTTTCAGAGTGTCTATTTTGAATTAAAACTTGTTACACCCACTGCAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 594-708, + strand, RNAz p=0.68963 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 594-708, + strand, RNAz p=0.68963 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC071589, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-499, gnl|bosTau2|chr24 (5790404-5790901) | |
| 1-499, gnl|Hg17|chr18 (75998462-75999024) | |
| 1-499, gnl|Mm7|chr18 (80413337-80412863) | |
| 519-716, gnl|bosTau2|chr24 (5790901-5791091) | |
| 519-716, gnl|canFam2|chr1 (3600542-3600273) | |
| 519-716, gnl|canFam2|chr1 (3600579-3600317) | |
| 519-716, gnl|dasNov1|scaffold_137114 (1471-1200) | |
| 519-716, gnl|dasNov1|scaffold_137114 (1524-1252) | |
| 519-716, gnl|echTel1|scaffold_259447 (240-519) | |
| 519-716, gnl|echTel1|scaffold_259447 (192-462) | |
| 519-716, gnl|hg17|chr13 (113169545-113169829) | |
| 519-716, gnl|hg17|chr18 (75999004-75999275) | |
| 519-716, gnl|Hg17|chr18 (75999024-75999219) | |
| 519-716, gnl|loxAfr1|scaffold_3100 (93275-93545) | |
| 519-716, gnl|loxAfr1|scaffold_3100 (93222-93494) | |
| 519-716, gnl|mm7|chr18 (80412888-80412645) | |
| 519-716, gnl|Mm7|chr18 (80412863-80412687) | |
| 519-716, gnl|monDom2|scaffold_3 (116852702-116852413) | |
| 519-716, gnl|oryCun1|scaffold_133556 (12117-11879) | |
| 519-716, gnl|oryCun1|scaffold_133556 (12162-11924) | |
| 519-716, gnl|panTro1|chr14 (96792333-96792619) | |
| 519-716, gnl|panTro1|chr17 (73217794-73218065) | |
| 519-716, gnl|rheMac2|chr18 (73385761-73386031) | |
| 519-716, gnl|rheMac2|chr18 (73385708-73385985) | |
| 519-716, gnl|rn3|chr18 (77090223-77090000) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-499, gnl|bosTau2|chr24 (5790404-5790901) | |
| 1-499, gnl|Hg17|chr18 (75998462-75999024) | |
| 1-499, gnl|Mm7|chr18 (80413337-80412863) | |
| 519-716, gnl|bosTau2|chr24 (5790901-5791091) | |
| 519-716, gnl|canFam2|chr1 (3600542-3600273) | |
| 519-716, gnl|canFam2|chr1 (3600579-3600317) | |
| 519-716, gnl|dasNov1|scaffold_137114 (1471-1200) | |
| 519-716, gnl|dasNov1|scaffold_137114 (1524-1252) | |
| 519-716, gnl|echTel1|scaffold_259447 (240-519) | |
| 519-716, gnl|echTel1|scaffold_259447 (192-462) | |
| 519-716, gnl|hg17|chr13 (113169545-113169829) | |
| 519-716, gnl|hg17|chr18 (75999004-75999275) | |
| 519-716, gnl|Hg17|chr18 (75999024-75999219) | |
| 519-716, gnl|loxAfr1|scaffold_3100 (93275-93545) | |
| 519-716, gnl|loxAfr1|scaffold_3100 (93222-93494) | |
| 519-716, gnl|mm7|chr18 (80412888-80412645) | |
| 519-716, gnl|Mm7|chr18 (80412863-80412687) | |
| 519-716, gnl|monDom2|scaffold_3 (116852702-116852413) | |
| 519-716, gnl|oryCun1|scaffold_133556 (12117-11879) | |
| 519-716, gnl|oryCun1|scaffold_133556 (12162-11924) | |
| 519-716, gnl|panTro1|chr14 (96792333-96792619) | |
| 519-716, gnl|panTro1|chr17 (73217794-73218065) | |
| 519-716, gnl|rheMac2|chr18 (73385761-73386031) | |
| 519-716, gnl|rheMac2|chr18 (73385708-73385985) | |
| 519-716, gnl|rn3|chr18 (77090223-77090000) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nms (0.213858) | |
| aor (0.195274) | |
| rec (0.17307) | |
| fat (0.147427) | |
| csk (0.140746) | |
| bla (0.124347) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nms (0.213858) | |
| aor (0.195274) | |
| rec (0.17307) | |
| fat (0.147427) | |
| csk (0.140746) | |
| bla (0.124347) |