Non-Coding RNA Search

Ss1.1-Pig3-SRG8018F11.5

Sequence:


               
               CAAGCTGAAAAAGCTCAACGTAAAGCGAAACCCCTTTCCCAAGGCAGAGGAGTCTGATAT
GTTCATAGATTCCATCAAGAGGCTGGAAAACCTATATCTGGTGGAGGAGAAAGACCTGTG
TTGGACTTGCCTGAAAAAATGCCAACAGGCCCGGGACAAGCTGAACAAAATCAAGAGCAT
GGCCACGGCAGGACCGAGAAGGGCCATCTTCTCCAGTTTGGCCTCACCTAACTCCACGGC
CAAGGAATCCCAGGAAGAATGGAGGATTCGCTCTACATCTCTCTAGAGTAGCTTATGGCA
AAAACCTGAAGACTAATCAGCTAACAAGAATAAGCAACTCTGAAGAAGAAAAGCCCTCAG
TTAGGAGAAGAAAGAGAGTGGCAAGGGGAATATTCTGGAAGCCAGGCTCTCCGATGCTGG
CCAAGCCACTGACTTGCTTCTTAAATTCATTTTGCCGCTCTTGCTTTAGATCATCTGTGT
GTGAAAATGACTTTGGGAAATACTTGGTGTGTGGTTTTCTTTTTAATGTGCATAGAGGAA
ATATTTAAGAAAATGATAGATATGGATTACAGACAATTAAAGATTTAAAAGAAGACTTTA
AGATATAAAAGAATTGTGGTCTCTATACTTCACTTGAGCTGGCAAAATCCCAACACCAGT
CACCTCTGATAAGTTGTGTATGTCTACTGTGATCCTCAGCCACTAAAATTTATATAAAGA
ATTCATACCAAAAAAAAACCTTGGAAATACTATGGATAGGTCAAAGTAGAGTTTTAACAA
ACCTTTCAGTAATGCAACAGTAGGTAGGATAAAAACACAGAAATGAACAACAGAGGGAAA
AATAGGAAACAAAAAATAAAATGGCAGACCGATATCCTAATATCTTAATAATTACATTAA
ATATAAATTGTTTTCTTTATTTGTGATGGCCCCAAATGAGAAACAACCAAATTTCCCTCA
ACAGGTAAAGGGTTAAACCAACTCTGGCATATCCACATCATGGAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCTGAAAAAGCTCAACGTAAAGCGAAACCCCTTTCCCAAGGCAGAGGAGTCTGATAT
GTTCATAGATTCCATCAAGAGGCTGGAAAACCTATATCTGGTGGAGGAGAAAGACCTGTG
TTGGACTTGCCTGAAAAAATGCCAACAGGCCCGGGACAAGCTGAACAAAATCAAGAGCAT
GGCCACGGCAGGACCGAGAAGGGCCATCTTCTCCAGTTTGGCCTCACCTAACTCCACGGC
CAAGGAATCCCAGGAAGAATGGAGGATTCGCTCTACATCTCTCTAGAGTAGCTTATGGCA
AAAACCTGAAGACTAATCAGCTAACAAGAATAAGCAACTCTGAAGAAGAAAAGCCCTCAG
TTAGGAGAAGAAAGAGAGTGGCAAGGGGAATATTCTGGAAGCCAGGCTCTCCGATGCTGG
CCAAGCCACTGACTTGCTTCTTAAATTCATTTTGCCGCTCTTGCTTTAGATCATCTGTGT
GTGAAAATGACTTTGGGAAATACTTGGTGTGTGGTTTTCTTTTTAATGTGCATAGAGGAA
ATATTTAAGAAAATGATAGATATGGATTACAGACAATTAAAGATTTAAAAGAAGACTTTA
AGATATAAAAGAATTGTGGTCTCTATACTTCACTTGAGCTGGCAAAATCCCAACACCAGT
CACCTCTGATAAGTTGTGTATGTCTACTGTGATCCTCAGCCACTAAAATTTATATAAAGA
ATTCATACCAAAAAAAAACCTTGGAAATACTATGGATAGGTCAAAGTAGAGTTTTAACAA
ACCTTTCAGTAATGCAACAGTAGGTAGGATAAAAACACAGAAATGAACAACAGAGGGAAA
AATAGGAAACAAAAAATAAAATGGCAGACCGATATCCTAATATCTTAATAATTACATTAA
ATATAAATTGTTTTCTTTATTTGTGATGGCCCCAAATGAGAAACAACCAAATTTCCCTCA
ACAGGTAAAGGGTTAAACCAACTCTGGCATATCCACATCATGGAATAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-265, gnl|bosTau2|chr28 (29212321-29212585)
               

               
               1-265, gnl|Hg17|chr10 (49791706-49791442)
               

               
               1-265, gnl|Mm7|chr14 (30440356-30440620)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr28 (29212321-29212585)
               

               
               1-265, gnl|Hg17|chr10 (49791706-49791442)
               

               
               1-265, gnl|Mm7|chr14 (30440356-30440620)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               tes (0.415628)
               

               
               cte (0.29274)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cte (0.29274)
               

               
               tra (0.123092)

	1-265, gnl\|bosTau2\|chr28 (29212321-29212585)
	1-265, gnl\|Hg17\|chr10 (49791706-49791442)
	1-265, gnl\|Mm7\|chr14 (30440356-30440620)