Non-Coding RNA Search

Ss1.1-Pig3-SRG8018G05.5

Sequence:


               
               AGTGCAAGAAGATGAACTTTCCAAAGTAGAGGAAAGTTCTGAAATTTCTCCAGAGCCAAA
AACAGAAATGAAGACCCTGAGATGGGCAATTTCACAGTTTGCTTCAGTGGAGAGGATTGT
AGGAGAAGATAAATATTTCTGTGAAAATTGCCATCATTACACTGAAGCTGAACGAAGTCT
TTTGTTTGACAAAATGCCTGAAGTTATAACTATTCATTTGAAGTGCTTTGCTGCTAGTGG
CTTGGAGTTTGATTGTTATGGTGGTGGACTTTCCAAGATCAACACTCCTTTACTGACACC
TCTTAAATTGTCACTGGAAGAATGGAGCACAAAGCCAACCAACGACAGCTATGGATTATT
TGCAGTTGTAATGCATAGTGGCATTACAATTAGTAGCGGGCATTATACTGCTTCTGTTAA
AGTCACTGACCTTAACAGTTTAGAACTAGATAAGGAAAACTTTGTGATCGACCAAATGTG
TGAAGTAGGTAAGCCAGAACCACTCAATGAGGAGGAAGCGAGGGGTGTGGTTGAAAATTA
TGATGATGAAGAAGTGTCCATTAGAGTCAGTGGAAGTACCCAGCCAAGTAAAGTTTTGAA
CAAAAAAAATGTAGAAGCTATTGGACTTCTTGGAGGACAAAAGAGCAAAGCAGATTATGA
GTTATACAACAAAGCATCTAATCCTGATAAAGTTGCCAGTACAGCACTTGCTGAAAACAG
AAATTCTGAGACTAATACTAATGGGACCCATGAATCTGATAGAAACAAGGAATCCAGTGA
CCAAATAGGCATTAATATTAGTGGATTTGAGAACAAAATTTCGTACATAGTGCAAAGCTT
AAAGGAGTATGAGGGGAAGTGGTTGCTTTTTGATGATTCTGAAGTGAAAGTTACTGAAGA
GAAGGACTTCTTGAATTCTCTTTCCCCTTCTACATCTCCTACATCTACTCCTTACTTGCT
ATTTTATAAGAAGTTATAGTGAGCGTATTTTCCTTGTGTATATATTAAACAGACCTGGAC
AACATCAGTAAAAGTCTTTAGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCAAGAAGATGAACTTTCCAAAGTAGAGGAAAGTTCTGAAATTTCTCCAGAGCCAAA
AACAGAAATGAAGACCCTGAGATGGGCAATTTCACAGTTTGCTTCAGTGGAGAGGATTGT
AGGAGAAGATAAATATTTCTGTGAAAATTGCCATCATTACACTGAAGCTGAACGAAGTCT
TTTGTTTGACAAAATGCCTGAAGTTATAACTATTCATTTGAAGTGCTTTGCTGCTAGTGG
CTTGGAGTTTGATTGTTATGGTGGTGGACTTTCCAAGATCAACACTCCTTTACTGACACC
TCTTAAATTGTCACTGGAAGAATGGAGCACAAAGCCAACCAACGACAGCTATGGATTATT
TGCAGTTGTAATGCATAGTGGCATTACAATTAGTAGCGGGCATTATACTGCTTCTGTTAA
AGTCACTGACCTTAACAGTTTAGAACTAGATAAGGAAAACTTTGTGATCGACCAAATGTG
TGAAGTAGGTAAGCCAGAACCACTCAATGAGGAGGAAGCGAGGGGTGTGGTTGAAAATTA
TGATGATGAAGAAGTGTCCATTAGAGTCAGTGGAAGTACCCAGCCAAGTAAAGTTTTGAA
CAAAAAAAATGTAGAAGCTATTGGACTTCTTGGAGGACAAAAGAGCAAAGCAGATTATGA
GTTATACAACAAAGCATCTAATCCTGATAAAGTTGCCAGTACAGCACTTGCTGAAAACAG
AAATTCTGAGACTAATACTAATGGGACCCATGAATCTGATAGAAACAAGGAATCCAGTGA
CCAAATAGGCATTAATATTAGTGGATTTGAGAACAAAATTTCGTACATAGTGCAAAGCTT
AAAGGAGTATGAGGGGAAGTGGTTGCTTTTTGATGATTCTGAAGTGAAAGTTACTGAAGA
GAAGGACTTCTTGAATTCTCTTTCCCCTTCTACATCTCCTACATCTACTCCTTACTTGCT
ATTTTATAAGAAGTTATAGTGAGCGTATTTTCCTTGTGTATATATTAAACAGACCTGGAC
AACATCAGTAAAAGTCTTTAGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5912011|emb|CAB55967.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5912011|emb|CAB55967.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               326-485, - strand, RNAz p=0.980567
               

               
               840-997, + strand, RNAz p=0.969037

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-485, - strand, RNAz p=0.980567
               

               
               840-997, + strand, RNAz p=0.969037

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003368, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003368, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               247-1032, gnl|bosTau2|chr3 (56742486-56743277)
               

               
               247-1032, gnl|Hg17|chr1 (62627938-62628729)
               

               
               247-1032, gnl|Mm7|chr4 (98326677-98327464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-1032, gnl|bosTau2|chr3 (56742486-56743277)
               

               
               247-1032, gnl|Hg17|chr1 (62627938-62628729)
               

               
               247-1032, gnl|Mm7|chr4 (98326677-98327464)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	326-485, - strand, RNAz p=0.980567
	840-997, + strand, RNAz p=0.969037

	247-1032, gnl\|bosTau2\|chr3 (56742486-56743277)
	247-1032, gnl\|Hg17\|chr1 (62627938-62628729)
	247-1032, gnl\|Mm7\|chr4 (98326677-98327464)

	tbr (0.308356)
	fat (0.294855)
	cty (0.20816)
	tes (0.207814)
	fty (0.17584)
	rec (0.17307)
	eli (0.151814)
	nca (0.136874)
	pla (0.133672)
	bla (0.124347)