Non-Coding RNA Search

Ss1.1-Pig3-SRG8018G15.3

Sequence:


               
               AGAAGTCCGGACTGTCATCAGGTTTGTGACCAACAAGACCGACCGGCACGTCAGCAGGCC
CGTGGTGTCCCTGCCGTCCACGTCGGAGGCCTTCCTGGCCTCGTCCGTCTCCAAGATCTC
CTCTTTGATGCTGCCCAACGCCGCCAGCATCTCGTCTGCCTCTCCCTCCTCCTCCCGGTC
CCCGTCGCTGTCCCCCAACTCGCCCCTCCCTTCCGAACACAGAAGCCTCTTCCTGGAGGC
CGCCTGCCATGACTCGGATTCCCTGGAGCCCTTGAACCTGTCATCGGGCTCCAAGACCCG
GTCTCCATCGCTTCCCCCAAAGGCCAAAAAACCCAAAGGCTTGGAGATCTCCGCGCCCCC
GCTGGTGCTCTCTGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCGGCCCTTCCCTC
TGGATCCCTTACCCCAGCCTTCTTCACTGCTCAGACACCAAATGGATTGCTTCTGACCCC
GAGTCCACTGCTGTCCAGCATACATTTCTGGAGCAGCCTTAGTCCAGTTGCTCCACTGAG
TCCTGCCCGGCTGCAGGGGCCAAACACGCTGTTCCAGTTCCCAACACTGCTTAACGGCCA
TATGCCAGTGCCAATCCCCAGTCTGGACAGAGCTGCTTCTCCAGTACTGCTTTCTTCGAA
CTCTCAGAAATCCTGATGACATCTGGCCACAACTAAAGACTCATTAACTGAGGAAACAAA
TTTGTCCCCATGGACTAGTTTACCTGTGTCATGAGAAGGACTTTGTGAAACCTGTCTGTA
ATTTGGTTTGCACTTTTCATAACATGGATGATCCAGAATGAAGATAGCATTTTAAAAACT
TTTTTATATTCAAGTATATATGAAAATCTGTTTTGCATTAAGTGAATTTTAATGTTTTTG
TTTTTATATCCTCTTAGCTATTAAGTGTTGAACACTGTTGACAGTGAAGAACTTTTCTTA
ATGGTTTTCATTTAACTATTAAGGATGTGAAGCTTTCTTCCTCTTTAATTCTGCATATGC
TAAACTATGCTTATATACACTATAACCAGCTGTGCCTTCCTTTCCATTTAGTTTACTGTA
AATGATTTGTATTTTTTAGTATTAAAATGTTTGAAAGACAAAAATTAGTATTCAACAGCT
CTCTAATAGAATTTCATTACTTTTCACAACTAGGCAATATGAAAGCAGGCTCATATTTTT
CTTTTTTGCTTTCAACTGTATGAGAATTGCCTTAGAACCTCTTTTGAACTGAAATTCAGT
AAATATAATGTCCAAGTGATGTTTTTATAAGAAACTAAGCCATATTTAGACAATAAACTT
TCATAAAAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCCGGACTGTCATCAGGTTTGTGACCAACAAGACCGACCGGCACGTCAGCAGGCC
CGTGGTGTCCCTGCCGTCCACGTCGGAGGCCTTCCTGGCCTCGTCCGTCTCCAAGATCTC
CTCTTTGATGCTGCCCAACGCCGCCAGCATCTCGTCTGCCTCTCCCTCCTCCTCCCGGTC
CCCGTCGCTGTCCCCCAACTCGCCCCTCCCTTCCGAACACAGAAGCCTCTTCCTGGAGGC
CGCCTGCCATGACTCGGATTCCCTGGAGCCCTTGAACCTGTCATCGGGCTCCAAGACCCG
GTCTCCATCGCTTCCCCCAAAGGCCAAAAAACCCAAAGGCTTGGAGATCTCCGCGCCCCC
GCTGGTGCTCTCTGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCGGCCCTTCCCTC
TGGATCCCTTACCCCAGCCTTCTTCACTGCTCAGACACCAAATGGATTGCTTCTGACCCC
GAGTCCACTGCTGTCCAGCATACATTTCTGGAGCAGCCTTAGTCCAGTTGCTCCACTGAG
TCCTGCCCGGCTGCAGGGGCCAAACACGCTGTTCCAGTTCCCAACACTGCTTAACGGCCA
TATGCCAGTGCCAATCCCCAGTCTGGACAGAGCTGCTTCTCCAGTACTGCTTTCTTCGAA
CTCTCAGAAATCCTGATGACATCTGGCCACAACTAAAGACTCATTAACTGAGGAAACAAA
TTTGTCCCCATGGACTAGTTTACCTGTGTCATGAGAAGGACTTTGTGAAACCTGTCTGTA
ATTTGGTTTGCACTTTTCATAACATGGATGATCCAGAATGAAGATAGCATTTTAAAAACT
TTTTTATATTCAAGTATATATGAAAATCTGTTTTGCATTAAGTGAATTTTAATGTTTTTG
TTTTTATATCCTCTTAGCTATTAAGTGTTGAACACTGTTGACAGTGAAGAACTTTTCTTA
ATGGTTTTCATTTAACTATTAAGGATGTGAAGCTTTCTTCCTCTTTAATTCTGCATATGC
TAAACTATGCTTATATACACTATAACCAGCTGTGCCTTCCTTTCCATTTAGTTTACTGTA
AATGATTTGTATTTTTTAGTATTAAAATGTTTGAAAGACAAAAATTAGTATTCAACAGCT
CTCTAATAGAATTTCATTACTTTTCACAACTAGGCAATATGAAAGCAGGCTCATATTTTT
CTTTTTTGCTTTCAACTGTATGAGAATTGCCTTAGAACCTCTTTTGAACTGAAATTCAGT
AAATATAATGTCCAAGTGATGTTTTTATAAGAAACTAAGCCATATTTAGACAATAAACTT
TCATAAAAGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61363433|gb|AAX42389.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61363433|gb|AAX42389.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-375, - strand, RNAz p=0.983985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-375, - strand, RNAz p=0.983985

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-454, gnl|bosTau2|chr5 (36791710-36791254)
               

               
               1-454, gnl|Hg17|chr12 (95143509-95143980)
               

               
               1-454, gnl|Mm7|chr10 (92824059-92823582)
               


               
               575-1328, gnl|bosTau2|chr5 (36777002-36776253)
               

               
               575-1328, gnl|Hg17|chr12 (95163325-95164086)
               

               
               575-1328, gnl|Mm7|chr10 (92808813-92808026)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr5 (36791710-36791254)
               

               
               1-454, gnl|Hg17|chr12 (95143509-95143980)
               

               
               1-454, gnl|Mm7|chr10 (92824059-92823582)
               


               
               575-1328, gnl|bosTau2|chr5 (36777002-36776253)
               

               
               575-1328, gnl|Hg17|chr12 (95163325-95164086)
               

               
               575-1328, gnl|Mm7|chr10 (92808813-92808026)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nlu (0.383362)
               

               
               sme (0.305437)
               

               
               lnt (0.284616)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               sme (0.305437)
               

               
               lnt (0.284616)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-454, gnl\|bosTau2\|chr5 (36791710-36791254)
	1-454, gnl\|Hg17\|chr12 (95143509-95143980)
	1-454, gnl\|Mm7\|chr10 (92824059-92823582)

	575-1328, gnl\|bosTau2\|chr5 (36777002-36776253)
	575-1328, gnl\|Hg17\|chr12 (95163325-95164086)
	575-1328, gnl\|Mm7\|chr10 (92808813-92808026)

	nlu (0.383362)
	sme (0.305437)
	lnt (0.284616)
	bla (0.248694)
	mgp (0.230681)
	lin (0.145603)
	spl (0.143184)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)