Ss1.1-Pig3-SRG8018I04.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ACCACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGAACGCCGAACGCCACG CCCTGCCCTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCC CCGAGGCACAGAGGAAACACACAGCCAAGAAGGCACCTGACGGCACTGTCATCCCCAACG GCTACTGTGACTTCTGCCTGGGTGGCTCCAAGAAGACGGGGTGTCCCGAGGACCTCATCT CCTGTGCCGACTGTGGGCGATCAGGACACCCCTCGTGTTTACAGTTCACGGTGAACATGA CGGCGGCCGTGCGAACCTACCGTTGGCAGTGCATCGAGTGCAAGTCCTGCAGCCTGTGTG GCACCTCCGAGAACGACGACCAGCTGCTGTTTTGTGACGACTGTGATCGGGGTTACCACA TGTACTGCCTGAGTCCCCCCATGGCGGAGCCCCCAGAAGGGAGCTGGAGTTGTCACCTCT GTCTTCGGCACCTGAAAGAGAAGGCCTCTGCCTACATCACCCTCACCTAGGCCTGCTCTG GCTCACCTGGACCTCTGGGGTGGTGCTTGCCTACCTGAGTCTCCTCCCGGAGCTCCTCCA CTCTCTCCCCATCCTTAATGCCCCACAGCGGGAGGGGCGGGCGAGCCTGAGGGGGGCGGG GCCACCCCCTCCCCTCCGTGCAAGTGGAATGCTTGCCCTGTGGGTTGGTGGGCCCAGCTG GGCCCTCTCCTTCCTCCCTCCTTCCCCACCCCTTGGCAAATGGGCACCAGGGGCTTCTGC TCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCAC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ACCACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGAACGCCGAACGCCACG CCCTGCCCTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCC CCGAGGCACAGAGGAAACACACAGCCAAGAAGGCACCTGACGGCACTGTCATCCCCAACG GCTACTGTGACTTCTGCCTGGGTGGCTCCAAGAAGACGGGGTGTCCCGAGGACCTCATCT CCTGTGCCGACTGTGGGCGATCAGGACACCCCTCGTGTTTACAGTTCACGGTGAACATGA CGGCGGCCGTGCGAACCTACCGTTGGCAGTGCATCGAGTGCAAGTCCTGCAGCCTGTGTG GCACCTCCGAGAACGACGACCAGCTGCTGTTTTGTGACGACTGTGATCGGGGTTACCACA TGTACTGCCTGAGTCCCCCCATGGCGGAGCCCCCAGAAGGGAGCTGGAGTTGTCACCTCT GTCTTCGGCACCTGAAAGAGAAGGCCTCTGCCTACATCACCCTCACCTAGGCCTGCTCTG GCTCACCTGGACCTCTGGGGTGGTGCTTGCCTACCTGAGTCTCCTCCCGGAGCTCCTCCA CTCTCTCCCCATCCTTAATGCCCCACAGCGGGAGGGGCGGGCGAGCCTGAGGGGGGCGGG GCCACCCCCTCCCCTCCGTGCAAGTGGAATGCTTGCCCTGTGGGTTGGTGGGCCCAGCTG GGCCCTCTCCTTCCTCCCTCCTTCCCCACCCCTTGGCAAATGGGCACCAGGGGCTTCTGC TCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCAC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
610-816, - strand, RNAz p=0.994863 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
610-816, - strand, RNAz p=0.994863 |
Aligned organism(s): 22 entry(ies) | More info |
Aligned organism(s): 22 entry(ies) | Help | Less info |
262-376, gnl|bosTau2|chr10 (51022615-51022501) | |
262-376, gnl|canFam2|chr8 (49075174-49075268) | |
262-376, gnl|danRer3|chr20 (37881084-37881178) | |
262-376, gnl|dasNov1|scaffold_1617 (21147-21238) | |
262-376, gnl|echTel1|scaffold_91530 (415-509) | |
262-376, gnl|fr1|chrUn (156747912-156747821) | |
262-376, gnl|galGal2|chr5 (23901636-23901543) | |
262-376, gnl|hg17|chr14 (72166078-72166172) | |
262-376, gnl|Hg17|chr14 (72166200-72166086) | |
262-376, gnl|loxAfr1|scaffold_43111 (18521-18427) | |
262-376, gnl|mm7|chr12 (81223079-81223173) | |
262-376, gnl|Mm7|chr12 (81223201-81223087) | |
262-376, gnl|monDom2|scaffold_8 (62798871-62798777) | |
262-376, gnl|oryCun1|scaffold_197772 (5162-5068) | |
262-376, gnl|panTro1|chr15 (71940857-71940951) | |
262-376, gnl|rheMac2|chr7 (135720338-135720432) | |
262-376, gnl|rn3|chr6 (107172241-107172335) | |
262-376, gnl|tetNig1|chr14 (6636637-6636728) | |
262-376, gnl|xenTro1|scaffold_218 (1426942-1427036) | |
451-816, gnl|bosTau2|chr18 (43833045-43833406) | |
451-816, gnl|Hg17|chr19 (43394621-43394263) | |
451-816, gnl|Mm7|chr7 (26255995-26256342) |
Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
262-376, gnl|bosTau2|chr10 (51022615-51022501) | |
262-376, gnl|canFam2|chr8 (49075174-49075268) | |
262-376, gnl|danRer3|chr20 (37881084-37881178) | |
262-376, gnl|dasNov1|scaffold_1617 (21147-21238) | |
262-376, gnl|echTel1|scaffold_91530 (415-509) | |
262-376, gnl|fr1|chrUn (156747912-156747821) | |
262-376, gnl|galGal2|chr5 (23901636-23901543) | |
262-376, gnl|hg17|chr14 (72166078-72166172) | |
262-376, gnl|Hg17|chr14 (72166200-72166086) | |
262-376, gnl|loxAfr1|scaffold_43111 (18521-18427) | |
262-376, gnl|mm7|chr12 (81223079-81223173) | |
262-376, gnl|Mm7|chr12 (81223201-81223087) | |
262-376, gnl|monDom2|scaffold_8 (62798871-62798777) | |
262-376, gnl|oryCun1|scaffold_197772 (5162-5068) | |
262-376, gnl|panTro1|chr15 (71940857-71940951) | |
262-376, gnl|rheMac2|chr7 (135720338-135720432) | |
262-376, gnl|rn3|chr6 (107172241-107172335) | |
262-376, gnl|tetNig1|chr14 (6636637-6636728) | |
262-376, gnl|xenTro1|scaffold_218 (1426942-1427036) | |
451-816, gnl|bosTau2|chr18 (43833045-43833406) | |
451-816, gnl|Hg17|chr19 (43394621-43394263) | |
451-816, gnl|Mm7|chr7 (26255995-26256342) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ece (0.45861) | |
eep (0.122564) | |
eru (0.120048) |