Non-Coding RNA Search

Ss1.1-Pig3-SRG8018J07.3

Sequence:


               
               TATACTTTACTCTTTCAAATACTAAAGCAAATGGGTTTGACTTACAGCACTCACACAACT
TCAGTTAAAATTATGGAGCTGAAATCTATTTTGCAATGCCTCAACCTTCCCTTGGTCAGC
CAGGAAAAAGAAAATAAAAGCAAAAGAAGAAAACATTTTAGAGTTTAGAAGAACAATTAT
TCTAACAAGTCTGAAAAACAGTAATAGTATTTCCACAACATGCCAATGTGACCTATGTTC
ACATACATAATTCCTAACTACTAAATGTACAATTTTTAAATATATGTGTGACCATCATTG
CATTTATAACATATTGATTTATATTATGAACAGATTTAATTGTTATAAGTAAATCTGCTT
GTATATTTTAGTCTATTATTATTATTACTTTTTTGAGTTCTTACCATATGCCAAGTGTAT
AGTGTCTGAAAGGAGTATACCTAGAGGTAAGCACTCAGGCACCATCCCCACCTTGACACT
TACAGCTCAGTGGAGGCTTCACAGATACTGCAATTTTTAGTATTGGCTGAATGGGGTAAA
AATTGGCATCTTTCATGATCTTTTCTAATGAATTTAGATATTTAAGGACAGGGCAGAATT
AGAGTCATTCTTTCCTACACTTAAAACACAGTGAATTGTCAAAGATTGGGAATATCTTGC
CCCCACCCAAGCAAATTGCATCAGATAATTATTCCACGTTAGATCATCTAGTTTCCCAAG
GATGGAGTTGGGGAGGTGAGATAGAGAGCCTCTGGGGACCAGGGCAGGGGTCAAGCTGTC
CCACTGGGGAAGCCTCTGCCCCAGTGGGGCAGCAGCCATGCAAGCGCTCAGTGGTGGTAT
GATCCAAGCCAGGGTATGGCTCCCTGTAGGATTCTCTAGAGAAAGGAGAGAACTGCAGCA
AAGGAGACCAGGGAACAATGAGAACATCTCTCCATTGCCTGTTTTTATTTTGTTCCCAGG
AAGCTACGTCCCAACCTCATGTCCCAAAAGAGAACCCAGAACTGAGAGTGTTTACCATTA
ATGTTCCTTGATTATGTAAATAAGTGAATTTAGTATATAGAAAATTAACATATTTCAGGA
ACACTATTATTTCTTGATCTTAATTGTGAAGACCAGATGCCAGATTTTTTTAAATCATAA
ATTTGGCAGCCATTGTTACTTTTAGACATTTCAGAGTCTAGGCACAGAATTCAAGTCTTA
CATTTGGAACAAATATAGCAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACTTTACTCTTTCAAATACTAAAGCAAATGGGTTTGACTTACAGCACTCACACAACT
TCAGTTAAAATTATGGAGCTGAAATCTATTTTGCAATGCCTCAACCTTCCCTTGGTCAGC
CAGGAAAAAGAAAATAAAAGCAAAAGAAGAAAACATTTTAGAGTTTAGAAGAACAATTAT
TCTAACAAGTCTGAAAAACAGTAATAGTATTTCCACAACATGCCAATGTGACCTATGTTC
ACATACATAATTCCTAACTACTAAATGTACAATTTTTAAATATATGTGTGACCATCATTG
CATTTATAACATATTGATTTATATTATGAACAGATTTAATTGTTATAAGTAAATCTGCTT
GTATATTTTAGTCTATTATTATTATTACTTTTTTGAGTTCTTACCATATGCCAAGTGTAT
AGTGTCTGAAAGGAGTATACCTAGAGGTAAGCACTCAGGCACCATCCCCACCTTGACACT
TACAGCTCAGTGGAGGCTTCACAGATACTGCAATTTTTAGTATTGGCTGAATGGGGTAAA
AATTGGCATCTTTCATGATCTTTTCTAATGAATTTAGATATTTAAGGACAGGGCAGAATT
AGAGTCATTCTTTCCTACACTTAAAACACAGTGAATTGTCAAAGATTGGGAATATCTTGC
CCCCACCCAAGCAAATTGCATCAGATAATTATTCCACGTTAGATCATCTAGTTTCCCAAG
GATGGAGTTGGGGAGGTGAGATAGAGAGCCTCTGGGGACCAGGGCAGGGGTCAAGCTGTC
CCACTGGGGAAGCCTCTGCCCCAGTGGGGCAGCAGCCATGCAAGCGCTCAGTGGTGGTAT
GATCCAAGCCAGGGTATGGCTCCCTGTAGGATTCTCTAGAGAAAGGAGAGAACTGCAGCA
AAGGAGACCAGGGAACAATGAGAACATCTCTCCATTGCCTGTTTTTATTTTGTTCCCAGG
AAGCTACGTCCCAACCTCATGTCCCAAAAGAGAACCCAGAACTGAGAGTGTTTACCATTA
ATGTTCCTTGATTATGTAAATAAGTGAATTTAGTATATAGAAAATTAACATATTTCAGGA
ACACTATTATTTCTTGATCTTAATTGTGAAGACCAGATGCCAGATTTTTTTAAATCATAA
ATTTGGCAGCCATTGTTACTTTTAGACATTTCAGAGTCTAGGCACAGAATTCAAGTCTTA
CATTTGGAACAAATATAGCAACAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               753-859, - strand, RNAz p=0.547587

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               753-859, - strand, RNAz p=0.547587

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-1212, gnl|bosTau2|chr1 (68916784-68917984)
               

               
               6-1212, gnl|Hg17|chr3 (162277066-162278287)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1212, gnl|bosTau2|chr1 (68916784-68917984)
               

               
               6-1212, gnl|Hg17|chr3 (162277066-162278287)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	6-1212, gnl\|bosTau2\|chr1 (68916784-68917984)
	6-1212, gnl\|Hg17\|chr3 (162277066-162278287)