Non-Coding RNA Search

Ss1.1-Pig3-SRG8018K03.5

Sequence:


               
               CTCGCGTTCTCGCATCCGTCGCCGCCGCCTCTTCCTCCGCCTCCTACTTCGCCTCTTCCT
GCCTCCTCCCGGCTTCCGCCGCCGCCGCTCCAGCCGCATCCCTACCTCGGGGCGAAGCGT
CTCCTTATTTATTTCCGTTTTCTCGCCACTCCAGCCTCCTGACACGGTGATCCGGGCGGG
CCCCGCAGGAATTTTATCCCTTCACCGGCCTCACACTAGTATCGCATGTCCACTATCCAG
AACCTCCAATCTTTCGACCCCTTTGCTGATGCAACTAAGGGTGACGACTTACTCCCGGCA
GGGACTGAGGATTACATTCATATAAGAATCCAGCAACGGAACGGCAGGAAGACACTGACT
ACTGTTCAGGGCATTGCAGATGATTATGACAAAAAGAAACTTGTGAAAGCTTTCAAAAAG
AAATTTGCCTGTAATGGTACTGTGATTGAACATCCTGAATACGGAGAGGTTATTCAGCTT
CAAGGTGACCAAAGAAAAAACATTTGCCAGTTTCTCTTGGAGGTTGGCATTGTCAAGGAG
GAGCAACTTAAGGTTCATGGATTCTAAAATGAACCTAAATACTTGGAGAATTTCTTGAGT
AATTTTGTTCTCTAAACCCAGTTTGGCTGCCTCGTGAAATGATTCTCCGCAGTAAATGGA
CTTTTCATTTATTTAATCATTCAAACTTCCATTCACATCTGCATGATTACAGAAAACATG
GGGTATGTAGGCTAGTAACACATAAGAAAATTTCAGTAAGATGGTTAATGAAACCCCGTA
TTCATCTTAACATGTTTCCAATGGAAAATATTTTGTTTTGAGTGTTTATTTGTTTTATTG
TTCAGTTTATTACTTTTCACTTGATTAAATGTTTTTTGTTGTATTAAACATGTATGTTGC
AGCTTAACAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCGTTCTCGCATCCGTCGCCGCCGCCTCTTCCTCCGCCTCCTACTTCGCCTCTTCCT
GCCTCCTCCCGGCTTCCGCCGCCGCCGCTCCAGCCGCATCCCTACCTCGGGGCGAAGCGT
CTCCTTATTTATTTCCGTTTTCTCGCCACTCCAGCCTCCTGACACGGTGATCCGGGCGGG
CCCCGCAGGAATTTTATCCCTTCACCGGCCTCACACTAGTATCGCATGTCCACTATCCAG
AACCTCCAATCTTTCGACCCCTTTGCTGATGCAACTAAGGGTGACGACTTACTCCCGGCA
GGGACTGAGGATTACATTCATATAAGAATCCAGCAACGGAACGGCAGGAAGACACTGACT
ACTGTTCAGGGCATTGCAGATGATTATGACAAAAAGAAACTTGTGAAAGCTTTCAAAAAG
AAATTTGCCTGTAATGGTACTGTGATTGAACATCCTGAATACGGAGAGGTTATTCAGCTT
CAAGGTGACCAAAGAAAAAACATTTGCCAGTTTCTCTTGGAGGTTGGCATTGTCAAGGAG
GAGCAACTTAAGGTTCATGGATTCTAAAATGAACCTAAATACTTGGAGAATTTCTTGAGT
AATTTTGTTCTCTAAACCCAGTTTGGCTGCCTCGTGAAATGATTCTCCGCAGTAAATGGA
CTTTTCATTTATTTAATCATTCAAACTTCCATTCACATCTGCATGATTACAGAAAACATG
GGGTATGTAGGCTAGTAACACATAAGAAAATTTCAGTAAGATGGTTAATGAAACCCCGTA
TTCATCTTAACATGTTTCCAATGGAAAATATTTTGTTTTGAGTGTTTATTTGTTTTATTG
TTCAGTTTATTACTTTTCACTTGATTAAATGTTTTTTGTTGTATTAAACATGTATGTTGC
AGCTTAACAATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FG85_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FG85_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               271-386, - strand, RNAz p=0.678119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-386, - strand, RNAz p=0.678119

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               220-567, gnl|bosTau2|chr10 (30323717-30324064)
               

               
               220-567, gnl|Hg17|chr17 (37098811-37100604)
               

               
               220-567, gnl|Mm7|chr7 (75659238-75658888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-567, gnl|bosTau2|chr10 (30323717-30324064)
               

               
               220-567, gnl|Hg17|chr17 (37098811-37100604)
               

               
               220-567, gnl|Mm7|chr7 (75659238-75658888)

Expressed library(ies): 54 entry(ies)

More info

Expressed library(ies): 54 entry(ies)

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               spc (1.02029)
               

               
               mga (0.801025)
               

               
               fco (0.78604)
               

               
               vin (0.665115)
               

               
               cki (0.660939)
               

               
               kid (0.648677)
               

               
               gul (0.532765)
               

               
               lyg (0.532411)
               

               
               thg (0.507164)
               

               
               bla (0.497389)
               

               
               tbr (0.462535)
               

               
               ecc (0.46014)
               

               
               mas (0.42061)
               

               
               ssp (0.406559)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.02029)
               

               
               mga (0.801025)
               

               
               fco (0.78604)
               

               
               vin (0.665115)
               

               
               cki (0.660939)
               

               
               kid (0.648677)
               

               
               gul (0.532765)
               

               
               lyg (0.532411)
               

               
               thg (0.507164)
               

               
               bla (0.497389)
               

               
               tbr (0.462535)
               

               
               ecc (0.46014)
               

               
               mas (0.42061)
               

               
               ssp (0.406559)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	220-567, gnl\|bosTau2\|chr10 (30323717-30324064)
	220-567, gnl\|Hg17\|chr17 (37098811-37100604)
	220-567, gnl\|Mm7\|chr7 (75659238-75658888)

	spc (1.02029)
	mga (0.801025)
	fco (0.78604)
	vin (0.665115)
	cki (0.660939)
	kid (0.648677)
	gul (0.532765)
	lyg (0.532411)
	thg (0.507164)
	bla (0.497389)
	tbr (0.462535)
	ecc (0.46014)
	mas (0.42061)
	ssp (0.406559)
	aor (0.390549)
	ova (0.387397)
	sug (0.381874)
	pgl (0.35545)
	fty (0.351679)
	sme (0.305437)
	bfe (0.299715)
	ski (0.29347)
	spl (0.286369)
	cst (0.280073)
	che (0.272628)
	ste (0.270416)
	pla (0.267344)
	tra (0.246184)
	ece (0.229305)
	jca (0.22792)
	fcc (0.197785)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	cli (0.152812)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	ret (0.128733)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)