Non-Coding RNA Search

Ss1.1-Pig3-SRG8018K10.3

Sequence:


               
               CCGGGTGCGCTTCACGCTCGGCACCTGGTGCTCAAGTCTTACATAATATCGGGGCCTTTG
GGACTTCGAACTTGAGGGCTGAGAAACCGGATGGTTAACTGACTGAGATCCGGGGGGGCT
CGGACGCCAACCAGGTACCCAATGGCAAGAGGATGAGGACCGCATTCACTAGCACGCAGC
TCCTGGAGCTCGAGCGGGAATTCTCTTCCAACATGTACCTGTCTAGACTCCGGAGGATCG
AAATCGCCACGTACCTGAACCTGTCGGAGAAGCAGGTGAAAATCTGGTTTCAGAACCGCC
GGGTGAAGCATAAGAAGGAAGGGAAGGGCACGCATAGGAACAGTCACGCGGGCTGCAAGT
GCGTCGGCAGCCAGGCGCACTACGCGCGCTCGGAGGATGATGACTCCTTGTCGCCGGCCT
CGGCCAACGATGACAAGGAGATTTCCCCGTTATAAGGGAGGGCGCTTTCGCCACACGCCC
GCAGCAGCCCTCACAATGCCTACAAGGCATGCACCCATGAGCCCAAATCCTCGCCCTTCC
GATGGTCTCACATGGGGAAGGTGGAGCCAAGCGTTCCCCGGGGGTGTAAGTGCCGGGACT
GACCCTTCACGTTTTCTCCTTCGCCTGTTTGTTTGGGGCTCCACTCGCAGTTATAGGTCT
TTTTTAAAAAAAATGTAAATAATCTAGATTCAACTCAGTCTTATGTAACAGAAAAAACCC
GGACTGGTTTAAGTTTAAAACTATATGTGGGTTTTTGAAAACGCATATTATTTTCCTTTC
CCTGTCTTTCAGAACGTGGTGAGAACACGAGGTTTCGTGATAATTTTTTGTTTTTGTTGT
TTTCATGAAAGTATTGAACTGCAAATAACGTAGAAAATTAAACCCTGTAGGTCTTGCTTC
CTGAAAACTTGCTTGGGGAGAGTTTAAAATCCAAGTTGCTGGAAGTCTCCTTGTGAATAG
TTTTATATAAAATTTATATTTATATTTATTTAAATAAATGGCACAAAATCAAGGTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGTGCGCTTCACGCTCGGCACCTGGTGCTCAAGTCTTACATAATATCGGGGCCTTTG
GGACTTCGAACTTGAGGGCTGAGAAACCGGATGGTTAACTGACTGAGATCCGGGGGGGCT
CGGACGCCAACCAGGTACCCAATGGCAAGAGGATGAGGACCGCATTCACTAGCACGCAGC
TCCTGGAGCTCGAGCGGGAATTCTCTTCCAACATGTACCTGTCTAGACTCCGGAGGATCG
AAATCGCCACGTACCTGAACCTGTCGGAGAAGCAGGTGAAAATCTGGTTTCAGAACCGCC
GGGTGAAGCATAAGAAGGAAGGGAAGGGCACGCATAGGAACAGTCACGCGGGCTGCAAGT
GCGTCGGCAGCCAGGCGCACTACGCGCGCTCGGAGGATGATGACTCCTTGTCGCCGGCCT
CGGCCAACGATGACAAGGAGATTTCCCCGTTATAAGGGAGGGCGCTTTCGCCACACGCCC
GCAGCAGCCCTCACAATGCCTACAAGGCATGCACCCATGAGCCCAAATCCTCGCCCTTCC
GATGGTCTCACATGGGGAAGGTGGAGCCAAGCGTTCCCCGGGGGTGTAAGTGCCGGGACT
GACCCTTCACGTTTTCTCCTTCGCCTGTTTGTTTGGGGCTCCACTCGCAGTTATAGGTCT
TTTTTAAAAAAAATGTAAATAATCTAGATTCAACTCAGTCTTATGTAACAGAAAAAACCC
GGACTGGTTTAAGTTTAAAACTATATGTGGGTTTTTGAAAACGCATATTATTTTCCTTTC
CCTGTCTTTCAGAACGTGGTGAGAACACGAGGTTTCGTGATAATTTTTTGTTTTTGTTGT
TTTCATGAAAGTATTGAACTGCAAATAACGTAGAAAATTAAACCCTGTAGGTCTTGCTTC
CTGAAAACTTGCTTGGGGAGAGTTTAAAATCCAAGTTGCTGGAAGTCTCCTTGTGAATAG
TTTTATATAAAATTTATATTTATATTTATTTAAATAAATGGCACAAAATCAAGGTTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55622752|ref|XP_517287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55622752|ref|XP_517287.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-505, - strand, RNAz p=0.999702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-505, - strand, RNAz p=0.999702

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               114-1020, gnl|bosTau2|chr6 (34713188-34712275)
               

               
               114-1020, gnl|Hg17|chr4 (54808676-54809599)
               

               
               114-1020, gnl|Mm7|chr5 (74495215-74496137)
               


               
               129-330, gnl|bosTau2|chr12 (17059679-17059880)
               

               
               129-330, gnl|Hg17|chr13 (27265714-27265915)
               

               
               129-330, gnl|Mm7|chr5 (146084193-146084394)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-1020, gnl|bosTau2|chr6 (34713188-34712275)
               

               
               114-1020, gnl|Hg17|chr4 (54808676-54809599)
               

               
               114-1020, gnl|Mm7|chr5 (74495215-74496137)
               


               
               129-330, gnl|bosTau2|chr12 (17059679-17059880)
               

               
               129-330, gnl|Hg17|chr13 (27265714-27265915)
               

               
               129-330, gnl|Mm7|chr5 (146084193-146084394)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.351679)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)

	114-1020, gnl\|bosTau2\|chr6 (34713188-34712275)
	114-1020, gnl\|Hg17\|chr4 (54808676-54809599)
	114-1020, gnl\|Mm7\|chr5 (74495215-74496137)

	129-330, gnl\|bosTau2\|chr12 (17059679-17059880)
	129-330, gnl\|Hg17\|chr13 (27265714-27265915)
	129-330, gnl\|Mm7\|chr5 (146084193-146084394)