Non-Coding RNA Search

Ss1.1-Pig3-SRG8018M13.5

Sequence:


               
               CAGTACTGTGTGCGAGCGATTTTGGAACGACCCCGGGTACCTGATCAGAGTGTTAAGCGG
GAACTCCAGGTCATAAGTCACATCGATGTCAACACACCAGCGTTGTTAACCCCTGTATTG
AAAACTCAAGAGAAAATGGTTGGCTGTTGGTTTTTCACTTCTGGTCCAGTCTCGTTGAGT
GCCAAAATCGAAAGAAAGGGCTACTGTAATGGAGAAGCTATTCCAATCTATGCAGAAATA
GAGAATTGTTCCTCCCGTCTGATTGTTCCCAAAGCTGCCATTTTCCAGACCCAGACTTAC
TTGGCCAGTGGGAAAACAAAGACTGTGCGGCACATGGTGGCCAATGTGCGCGGGAACCAC
ATCGCATCCGGGAGCACTGACACCTGGAACGGGAAGACCCTCAAGATCCCACCTGTGACA
CCGTCCATCCTGGACTGCTGCATCATCCGTGTGGACTACTCCTTAGCTGTGTATATTCAC
ATTCCTGGTGCTAAAAAATTGATGCTTGAACTGCCCTTAGTGATTGGCACGGTTCCATAT
AATGGTTTTGGCAGCAGAAACTCCAGCATTGCCAGCCAGTTCATTATGGATATGAGCTGG
TTGACACTGACTCTGCCAGAACAGCCTGAAGCTCCACCAAATTATGCAGACGTGGTGTCA
GAGGAAGAATTCTCTAGACATGTTCCTCCTTACCCTCAACCCCCTAACTGCGAGGGGGAC
TCATGCTGCCCTATGTTTGCCTGCATTCAGGAATTCCGGTTTCAGCCTCCACCTCTTTAT
TCAGAGGTTGATCCACATCCTAGTGACATAGAAGAAACCCAGCCTGTTTCCTTCATCCTC
TGAACATAGTTCAGAAATCACTGTGTTCCTCATCAAATTAGAACATTGGTTCTTTCCCCC
TGCCTTTTTGGGGAAGAAGGAAGATTAGCTTCAGAACATAAATGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTACTGTGTGCGAGCGATTTTGGAACGACCCCGGGTACCTGATCAGAGTGTTAAGCGG
GAACTCCAGGTCATAAGTCACATCGATGTCAACACACCAGCGTTGTTAACCCCTGTATTG
AAAACTCAAGAGAAAATGGTTGGCTGTTGGTTTTTCACTTCTGGTCCAGTCTCGTTGAGT
GCCAAAATCGAAAGAAAGGGCTACTGTAATGGAGAAGCTATTCCAATCTATGCAGAAATA
GAGAATTGTTCCTCCCGTCTGATTGTTCCCAAAGCTGCCATTTTCCAGACCCAGACTTAC
TTGGCCAGTGGGAAAACAAAGACTGTGCGGCACATGGTGGCCAATGTGCGCGGGAACCAC
ATCGCATCCGGGAGCACTGACACCTGGAACGGGAAGACCCTCAAGATCCCACCTGTGACA
CCGTCCATCCTGGACTGCTGCATCATCCGTGTGGACTACTCCTTAGCTGTGTATATTCAC
ATTCCTGGTGCTAAAAAATTGATGCTTGAACTGCCCTTAGTGATTGGCACGGTTCCATAT
AATGGTTTTGGCAGCAGAAACTCCAGCATTGCCAGCCAGTTCATTATGGATATGAGCTGG
TTGACACTGACTCTGCCAGAACAGCCTGAAGCTCCACCAAATTATGCAGACGTGGTGTCA
GAGGAAGAATTCTCTAGACATGTTCCTCCTTACCCTCAACCCCCTAACTGCGAGGGGGAC
TCATGCTGCCCTATGTTTGCCTGCATTCAGGAATTCCGGTTTCAGCCTCCACCTCTTTAT
TCAGAGGTTGATCCACATCCTAGTGACATAGAAGAAACCCAGCCTGTTTCCTTCATCCTC
TGAACATAGTTCAGAAATCACTGTGTTCCTCATCAAATTAGAACATTGGTTCTTTCCCCC
TGCCTTTTTGGGGAAGAAGGAAGATTAGCTTCAGAACATAAATGAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642725|ref|XP_523166.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642725|ref|XP_523166.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               160-943, gnl|bosTau2|chr20 (18973823-18974579)
               

               
               160-943, gnl|Hg17|chr15 (96312299-96315526)
               

               
               160-943, gnl|Mm7|chr7 (64598351-64595107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-943, gnl|bosTau2|chr20 (18973823-18974579)
               

               
               160-943, gnl|Hg17|chr15 (96312299-96315526)
               

               
               160-943, gnl|Mm7|chr7 (64598351-64595107)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.245128)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               pgl (0.118483)

	160-943, gnl\|bosTau2\|chr20 (18973823-18974579)
	160-943, gnl\|Hg17\|chr15 (96312299-96315526)
	160-943, gnl\|Mm7\|chr7 (64598351-64595107)