Non-Coding RNA Search

Ss1.1-Pig3-SRG8018O04.5

Sequence:


               
               TTGGGATCTATGCCGGGATCTTCCTCCTGCTGCTGGTCACCGTGTTGGCCTGTGCCGTGT
ACTCCTGTGGCTCTCTGTTCCCTGAGGCCCTGCGGCGTCTGTCGCGCAGCATTGTCCGCT
CTCGGGCACACAGCACTGCGGTTGGCATCTTTTCGGTCCTGCTTGTGTTCACTTCCGCCA
TTGCCAACATGTTCACCTGTAACCACACCCCCATACGGACTTGCGCAGCCCGGATGCTGA
ATCTGACACCTGCTGACGTCACCCCCTGCCACCTACAGCAGCTCAATTACTCTCTGGGCC
TGGATGCTCCCCTGTGTGAGGGCACCGCACCCACCTGCAGCTTCCCTGAGTACTTCGTCG
GGAACGCGCTGCTGAGTCTCTTGGCCAGCTCTGTCTTCCTGCACATCAGTAGCATCGGGA
AGCTGGCCATGATCCTTGTCCTCGGGCTCATCTATTTGGTGCTGCTCCTGCTGGGTCCCC
CGGCCACCATCTTTGACAACTACGACCTACGATCAGGTGGGCCGCTCCCACATCACCGCC
CTGGCCGACTACGCCATGCGGCTCATGGAGCAGATGAAGCACATCAACGAGCACTCCTTC
AACAATTTCCAGATGAAGATCGGGCTGAACATGGGTCCGGTGGTGGCAGGCGTCATCGGG
GCCCGGAAGCCGCAGTATGACATCTGGGGGAACACAGTGAATGTCTCTAGCCGTATGGAC
AGCACCGGGGTCCCTGACCGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGATCTATGCCGGGATCTTCCTCCTGCTGCTGGTCACCGTGTTGGCCTGTGCCGTGT
ACTCCTGTGGCTCTCTGTTCCCTGAGGCCCTGCGGCGTCTGTCGCGCAGCATTGTCCGCT
CTCGGGCACACAGCACTGCGGTTGGCATCTTTTCGGTCCTGCTTGTGTTCACTTCCGCCA
TTGCCAACATGTTCACCTGTAACCACACCCCCATACGGACTTGCGCAGCCCGGATGCTGA
ATCTGACACCTGCTGACGTCACCCCCTGCCACCTACAGCAGCTCAATTACTCTCTGGGCC
TGGATGCTCCCCTGTGTGAGGGCACCGCACCCACCTGCAGCTTCCCTGAGTACTTCGTCG
GGAACGCGCTGCTGAGTCTCTTGGCCAGCTCTGTCTTCCTGCACATCAGTAGCATCGGGA
AGCTGGCCATGATCCTTGTCCTCGGGCTCATCTATTTGGTGCTGCTCCTGCTGGGTCCCC
CGGCCACCATCTTTGACAACTACGACCTACGATCAGGTGGGCCGCTCCCACATCACCGCC
CTGGCCGACTACGCCATGCGGCTCATGGAGCAGATGAAGCACATCAACGAGCACTCCTTC
AACAATTTCCAGATGAAGATCGGGCTGAACATGGGTCCGGTGGTGGCAGGCGTCATCGGG
GCCCGGAAGCCGCAGTATGACATCTGGGGGAACACAGTGAATGTCTCTAGCCGTATGGAC
AGCACCGGGGTCCCTGACCGAATC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               191-350, gnl|bosTau2|chr5 (26323175-26323334)
               

               
               191-350, gnl|canFam2|chr27 (8757937-8757754)
               

               
               191-350, gnl|echTel1|scaffold_325175 (88256-88077)
               

               
               191-350, gnl|fr1|chrUn (294609973-294609798)
               

               
               191-350, gnl|hg17|chr12 (47453987-47454170)
               

               
               191-350, gnl|Hg17|chr12 (47454149-47453990)
               

               
               191-350, gnl|loxAfr1|scaffold_12527 (73415-73600)
               

               
               191-350, gnl|mm7|chr15 (98582821-98583003)
               

               
               191-350, gnl|Mm7|chr15 (98582983-98582824)
               

               
               191-350, gnl|monDom2|scaffold_3226 (2903-3087)
               

               
               191-350, gnl|panTro1|chr10 (48548321-48548504)
               

               
               191-350, gnl|rheMac2|chr11 (45895411-45895594)
               

               
               191-350, gnl|rn3|chr7 (137423024-137423206)
               

               
               191-350, gnl|xenTro1|scaffold_133 (961976-962165)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-350, gnl|bosTau2|chr5 (26323175-26323334)
               

               
               191-350, gnl|canFam2|chr27 (8757937-8757754)
               

               
               191-350, gnl|echTel1|scaffold_325175 (88256-88077)
               

               
               191-350, gnl|fr1|chrUn (294609973-294609798)
               

               
               191-350, gnl|hg17|chr12 (47453987-47454170)
               

               
               191-350, gnl|Hg17|chr12 (47454149-47453990)
               

               
               191-350, gnl|loxAfr1|scaffold_12527 (73415-73600)
               

               
               191-350, gnl|mm7|chr15 (98582821-98583003)
               

               
               191-350, gnl|Mm7|chr15 (98582983-98582824)
               

               
               191-350, gnl|monDom2|scaffold_3226 (2903-3087)
               

               
               191-350, gnl|panTro1|chr10 (48548321-48548504)
               

               
               191-350, gnl|rheMac2|chr11 (45895411-45895594)
               

               
               191-350, gnl|rn3|chr7 (137423024-137423206)
               

               
               191-350, gnl|xenTro1|scaffold_133 (961976-962165)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hlv (0.278513)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)

	191-350, gnl\|bosTau2\|chr5 (26323175-26323334)
	191-350, gnl\|canFam2\|chr27 (8757937-8757754)
	191-350, gnl\|echTel1\|scaffold_325175 (88256-88077)
	191-350, gnl\|fr1\|chrUn (294609973-294609798)
	191-350, gnl\|hg17\|chr12 (47453987-47454170)
	191-350, gnl\|Hg17\|chr12 (47454149-47453990)
	191-350, gnl\|loxAfr1\|scaffold_12527 (73415-73600)
	191-350, gnl\|mm7\|chr15 (98582821-98583003)
	191-350, gnl\|Mm7\|chr15 (98582983-98582824)
	191-350, gnl\|monDom2\|scaffold_3226 (2903-3087)
	191-350, gnl\|panTro1\|chr10 (48548321-48548504)
	191-350, gnl\|rheMac2\|chr11 (45895411-45895594)
	191-350, gnl\|rn3\|chr7 (137423024-137423206)
	191-350, gnl\|xenTro1\|scaffold_133 (961976-962165)