Non-Coding RNA Search

Ss1.1-Pig3-SRG8019A02.5

Sequence:


               
               GTCCTGCACCTCCCACGCTGGATGCCAAGCTTGAGCTCCTGGACTCTCAGACTCCCAGTG
CATAAGGACCAGGACAGATAATGTCACAGGACAGATGACAGAAGACATAGAAGAGAGAGG
CATCACACATGGGCTTGGCCCAGCCGCAGCACCCACGCCTGGGGCAAAGCAGTGTCTCCT
TCAGTGCCTGGCTCCCGCTACTAGGGACCCCTAGGGACCCCTTGAATCTTCGGGCTGATC
CGGGCCCAAGATCCCTGTCAGCAGTGATTACCCTGGGTATCAGATCCCTGCCAACCCCAC
CTGGAATCTTTGCAGTCAGTAAAA------------------------------------
------------GTCACTGCTGTGGCTCAGGTCACTGCTGTGGTGCACGTTTGATTCCTA
GCCAAGGAACTTCCACATGCCTCTGTCAAGGCCAAAACAACAACAACCCATCATAGCAGA
ACAAGGGTTGTTTGGGGAGAGTTACATCTGGTTCTGAAGAGCCCCTCGCACCCTTTGCCA
GGCCTAGTACGAAGCTGGGAATACGGCAGTGAACATAGCTGACCGAAGTCCTGTCCTTAT
GGTGCTCACACCCTGCTTGAGTAGATGAACTAGTAAACTAATAAACAAGATAGTTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTGCACCTCCCACGCTGGATGCCAAGCTTGAGCTCCTGGACTCTCAGACTCCCAGTG
CATAAGGACCAGGACAGATAATGTCACAGGACAGATGACAGAAGACATAGAAGAGAGAGG
CATCACACATGGGCTTGGCCCAGCCGCAGCACCCACGCCTGGGGCAAAGCAGTGTCTCCT
TCAGTGCCTGGCTCCCGCTACTAGGGACCCCTAGGGACCCCTTGAATCTTCGGGCTGATC
CGGGCCCAAGATCCCTGTCAGCAGTGATTACCCTGGGTATCAGATCCCTGCCAACCCCAC
CTGGAATCTTTGCAGTCAGTAAAA------------------------------------
------------GTCACTGCTGTGGCTCAGGTCACTGCTGTGGTGCACGTTTGATTCCTA
GCCAAGGAACTTCCACATGCCTCTGTCAAGGCCAAAACAACAACAACCCATCATAGCAGA
ACAAGGGTTGTTTGGGGAGAGTTACATCTGGTTCTGAAGAGCCCCTCGCACCCTTTGCCA
GGCCTAGTACGAAGCTGGGAATACGGCAGTGAACATAGCTGACCGAAGTCCTGTCCTTAT
GGTGCTCACACCCTGCTTGAGTAGATGAACTAGTAAACTAATAAACAAGATAGTTCCAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               73-176, - strand, RNAz p=0.907385
               

               
               159-316, - strand, RNAz p=0.953822

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-176, - strand, RNAz p=0.907385
               

               
               159-316, - strand, RNAz p=0.953822

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152658, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152658, -

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-324, gnl|bosTau2|chr18 (41821883-41821575)
               

               
               1-324, gnl|canFam2|chr1 (119564858-119564577)
               

               
               1-324, gnl|hg17|chr19 (41217874-41218160)
               

               
               1-324, gnl|Hg17|chr19 (41218246-41217924)
               

               
               1-324, gnl|loxAfr1|scaffold_68540 (4676-4388)
               

               
               1-324, gnl|panTro1|chr20 (38063942-38064228)
               

               
               1-324, gnl|rheMac2|chr19 (42525222-42525513)
               

               
               1-324, gnl|rn3|chr1 (85316023-85315746)
               


               
               423-610, gnl|bosTau2|chr18 (41821569-41821375)
               

               
               423-610, gnl|Hg17|chr19 (41217918-41217733)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr18 (41821883-41821575)
               

               
               1-324, gnl|canFam2|chr1 (119564858-119564577)
               

               
               1-324, gnl|hg17|chr19 (41217874-41218160)
               

               
               1-324, gnl|Hg17|chr19 (41218246-41217924)
               

               
               1-324, gnl|loxAfr1|scaffold_68540 (4676-4388)
               

               
               1-324, gnl|panTro1|chr20 (38063942-38064228)
               

               
               1-324, gnl|rheMac2|chr19 (42525222-42525513)
               

               
               1-324, gnl|rn3|chr1 (85316023-85315746)
               


               
               423-610, gnl|bosTau2|chr18 (41821569-41821375)
               

               
               423-610, gnl|Hg17|chr19 (41217918-41217733)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	73-176, - strand, RNAz p=0.907385
	159-316, - strand, RNAz p=0.953822

	1-324, gnl\|bosTau2\|chr18 (41821883-41821575)
	1-324, gnl\|canFam2\|chr1 (119564858-119564577)
	1-324, gnl\|hg17\|chr19 (41217874-41218160)
	1-324, gnl\|Hg17\|chr19 (41218246-41217924)
	1-324, gnl\|loxAfr1\|scaffold_68540 (4676-4388)
	1-324, gnl\|panTro1\|chr20 (38063942-38064228)
	1-324, gnl\|rheMac2\|chr19 (42525222-42525513)
	1-324, gnl\|rn3\|chr1 (85316023-85315746)

	423-610, gnl\|bosTau2\|chr18 (41821569-41821375)
	423-610, gnl\|Hg17\|chr19 (41217918-41217733)