Ss1.1-Pig3-SRG8019B02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCACCCTCAAAAAAGAAAAATTTATACAGTCTAATAAAATGATTGTGAAATTCCGAG AAGATCAAATCATGCGCCTGGAGAAGCTCCACAAAGAATCCCGGGGAAGTTTTCTGCCTG AGGAGCAGGATCGTTTGCTGTCAGAACTGAGGGACGAGATTCAAACTCTGCGAGAACAAG AAAAGGCAGCTGGAATTAGAATCAGAGCTTCAGTCTTTGCAAAAAGCAAATCTTAATCTT GAAAACCTTTTGGAAGCAACAAAAGTCTGTAAGCGGCAAGAAGTTTCTCAGCTGAATAAA ATTCATGCTGAAACACTTAAGATTATAACGACACCAACCAAGGCTTATCATCTCTGGTCT CGACCACTACTGAAGTTCAGCCCTGAACCAGAGAGCTTTGGCTCTGCGCAAACCCAGAAT TCTAGCAACTTGGATAATGATATCTTAAGTGAGCCAGTGCCTCCTGAGATGAGTGAACAA GCTTTTGAAGCCATTTCCGAAGAGCTGAGAATGGTGCAGGAACAAATGAGTGCCCTTCAA GTCAAGTTGGATGAAGAAGAGCATAAAAATGTAAAGCTTCAGCAGCAGATTGACAAACTG GAACATCATTCTACTCAGATGCAGGAGCTTTTCTCATCAGAAAGAAATGATTGGACCAAA CAGCAGCTGGAGCATCTCTCTCAGTTGAACGTCCTTGAAAAGCAGCTTCAAGACACACAG ACCAAGAATGACTTTTTGAAAAGTGAGGTACATGACCTGCGAGTCGTTCTTCATTCTGCA GACAAGGAGCTCTCTTCAGTGAAACTGGAGTACACTTTATTCAGAGAGAGTCAGGAGAAA GAACTCAACAGCCTTTCCGAGAGACACATGCAGGTCCAGCTTCAACTGGATAATGTCAGG TTAGAAAATGAAAAGCTGCTTGAGAGCAAAACCTGCCTACAGGATTCCTATGACAACTTA CAAGAAGTGATGAAGTTTGAAATTGACCAACTTTCAAAAAGCCTCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCACCCTCAAAAAAGAAAAATTTATACAGTCTAATAAAATGATTGTGAAATTCCGAG AAGATCAAATCATGCGCCTGGAGAAGCTCCACAAAGAATCCCGGGGAAGTTTTCTGCCTG AGGAGCAGGATCGTTTGCTGTCAGAACTGAGGGACGAGATTCAAACTCTGCGAGAACAAG AAAAGGCAGCTGGAATTAGAATCAGAGCTTCAGTCTTTGCAAAAAGCAAATCTTAATCTT GAAAACCTTTTGGAAGCAACAAAAGTCTGTAAGCGGCAAGAAGTTTCTCAGCTGAATAAA ATTCATGCTGAAACACTTAAGATTATAACGACACCAACCAAGGCTTATCATCTCTGGTCT CGACCACTACTGAAGTTCAGCCCTGAACCAGAGAGCTTTGGCTCTGCGCAAACCCAGAAT TCTAGCAACTTGGATAATGATATCTTAAGTGAGCCAGTGCCTCCTGAGATGAGTGAACAA GCTTTTGAAGCCATTTCCGAAGAGCTGAGAATGGTGCAGGAACAAATGAGTGCCCTTCAA GTCAAGTTGGATGAAGAAGAGCATAAAAATGTAAAGCTTCAGCAGCAGATTGACAAACTG GAACATCATTCTACTCAGATGCAGGAGCTTTTCTCATCAGAAAGAAATGATTGGACCAAA CAGCAGCTGGAGCATCTCTCTCAGTTGAACGTCCTTGAAAAGCAGCTTCAAGACACACAG ACCAAGAATGACTTTTTGAAAAGTGAGGTACATGACCTGCGAGTCGTTCTTCATTCTGCA GACAAGGAGCTCTCTTCAGTGAAACTGGAGTACACTTTATTCAGAGAGAGTCAGGAGAAA GAACTCAACAGCCTTTCCGAGAGACACATGCAGGTCCAGCTTCAACTGGATAATGTCAGG TTAGAAAATGAAAAGCTGCTTGAGAGCAAAACCTGCCTACAGGATTCCTATGACAACTTA CAAGAAGTGATGAAGTTTGAAATTGACCAACTTTCAAAAAGCCTCCAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 203-321, - strand, RNAz p=0.616309 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 203-321, - strand, RNAz p=0.616309 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 3-180, gnl|bosTau2|chr22 (12336867-12336690) | |
| 3-180, gnl|Hg17|chr3 (44818294-44818471) | |
| 3-180, gnl|Mm7|chr9 (122691873-122692050) | |
| 181-321, gnl|bosTau2|chr22 (12333262-12333122) | |
| 181-321, gnl|canFam2|chr20 (46485184-46485015) | |
| 181-321, gnl|canFam2|chr24 (3675937-3675815) | |
| 181-321, gnl|danRer3|chrUn (92053398-92053558) | |
| 181-321, gnl|echTel1|scaffold_309309 (14594-14763) | |
| 181-321, gnl|echTel1|scaffold_309309 (14748-14619) | |
| 181-321, gnl|galGal2|chr2 (42295883-42295712) | |
| 181-321, gnl|hg17|chr20 (22891460-22891583) | |
| 181-321, gnl|hg17|chr3 (44822321-44822490) | |
| 181-321, gnl|Hg17|chr3 (44822342-44822482) | |
| 181-321, gnl|loxAfr1|scaffold_16220 (10844-11013) | |
| 181-321, gnl|loxAfr1|scaffold_16220 (10998-10869) | |
| 181-321, gnl|mm7|chr9 (122697238-122697407) | |
| 181-321, gnl|mm7|chr9 (122697397-122697260) | |
| 181-321, gnl|Mm7|chr9 (122697260-122697400) | |
| 181-321, gnl|monDom2|scaffold_7 (65400660-65400824) | |
| 181-321, gnl|oryCun1|scaffold_183020 (45341-45510) | |
| 181-321, gnl|oryCun1|scaffold_183020 (45504-45361) | |
| 181-321, gnl|panTro1|chr2 (46124631-46124802) | |
| 181-321, gnl|panTro1|chr21 (22838652-22838770) | |
| 181-321, gnl|rheMac2|chr10 (56251913-56252031) | |
| 181-321, gnl|rheMac2|chr2 (91731595-91731426) | |
| 181-321, gnl|rn3|chr8 (127757544-127757713) | |
| 181-321, gnl|rn3|chr8 (127757703-127757565) | |
| 181-321, gnl|tetNig1|chr10 (5502188-5502320) | |
| 181-321, gnl|xenTro1|scaffold_436 (914820-914647) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-180, gnl|bosTau2|chr22 (12336867-12336690) | |
| 3-180, gnl|Hg17|chr3 (44818294-44818471) | |
| 3-180, gnl|Mm7|chr9 (122691873-122692050) | |
| 181-321, gnl|bosTau2|chr22 (12333262-12333122) | |
| 181-321, gnl|canFam2|chr20 (46485184-46485015) | |
| 181-321, gnl|canFam2|chr24 (3675937-3675815) | |
| 181-321, gnl|danRer3|chrUn (92053398-92053558) | |
| 181-321, gnl|echTel1|scaffold_309309 (14594-14763) | |
| 181-321, gnl|echTel1|scaffold_309309 (14748-14619) | |
| 181-321, gnl|galGal2|chr2 (42295883-42295712) | |
| 181-321, gnl|hg17|chr20 (22891460-22891583) | |
| 181-321, gnl|hg17|chr3 (44822321-44822490) | |
| 181-321, gnl|Hg17|chr3 (44822342-44822482) | |
| 181-321, gnl|loxAfr1|scaffold_16220 (10844-11013) | |
| 181-321, gnl|loxAfr1|scaffold_16220 (10998-10869) | |
| 181-321, gnl|mm7|chr9 (122697238-122697407) | |
| 181-321, gnl|mm7|chr9 (122697397-122697260) | |
| 181-321, gnl|Mm7|chr9 (122697260-122697400) | |
| 181-321, gnl|monDom2|scaffold_7 (65400660-65400824) | |
| 181-321, gnl|oryCun1|scaffold_183020 (45341-45510) | |
| 181-321, gnl|oryCun1|scaffold_183020 (45504-45361) | |
| 181-321, gnl|panTro1|chr2 (46124631-46124802) | |
| 181-321, gnl|panTro1|chr21 (22838652-22838770) | |
| 181-321, gnl|rheMac2|chr10 (56251913-56252031) | |
| 181-321, gnl|rheMac2|chr2 (91731595-91731426) | |
| 181-321, gnl|rn3|chr8 (127757544-127757713) | |
| 181-321, gnl|rn3|chr8 (127757703-127757565) | |
| 181-321, gnl|tetNig1|chr10 (5502188-5502320) | |
| 181-321, gnl|xenTro1|scaffold_436 (914820-914647) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| spl (0.143184) |