Ss1.1-Pig3-SRG8019E03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCCGTAGCCCCTGCACTTATCATCAGATCTCATATAATTGTTGGTAAAGACTCTGCGA GTCTGCACAGGTCAGTTCCCTCCGACCTCCGCGGCTGAAAGTCGGAGTCAGTCCTCCGCC CCCCAGCAGTCGGAAGGTTACGGCCTCGGGAGACCTGGAGGCGGTGGCCGCGGCCCAGGA AGGAGCAGCGGCGGCGCCGGGAAAGAAGCAGGAAGAGAAGACCGTCCTCTCTTAGGAATC CAGCACTGGAGAAACGAGGAAAATTCTCCCAAGGATGGTTTCCCATTCAGAGTTGAGGAA ACTCTTCTGTTCTGCGGATGCAGTGTGCTTTGATGTTGATAGCACGGTCATCAGAGAAGA AGGAATTGATGAGCTGGCCAAGTTCTGTGGAGTTGAGGATGCTGTGTCAGAAATGACACG GCGAGCCATGGGCGGAGCCGTGCCTTTCAAGGCTGCCCTCACAGAGCGCCTGGCCCTGAT CCAGCCCTCCAGGGAGCAGGTGCAGAGGCTCATAGCGGAGCATCCCCCACACCTGACCCC GGGCATAAGGGAGCTGGTAAGTCGCCTACAGGAGCGGAATGTTCAGGTCTTCCTGATCTC CGGCGGCTTCAGGAGCATCGTAGAGCACGTGGCTTCAAAGCTCAACATCCCGTCGACCAA CGTGTTTGCCAACAGGCTGAAATTCTACTTTAACGGTGAATATGCAGGTTTTGATGAGAC GCAGCCAACCGCTGAATCCGGTGGGAAAGGAAAAGTTATTAAATTTTTAAAGGAAAAATT TCATTTTAAGAAAATAGTCATGATTGGAGATGGAGCCACCGACATGGAAGCCTGTCCTCC TGCTGATGTTTTCATTGGATTTGGAGGGAATGTGATCAGGCAACAAGTAAAGGACAACGC GGAATGGTACATCACTGATTTCGTAGAGCTTCTGGGAGAACTGGAAGAATAAGATCAACT TTGATACAGTTCATAACAACTTCAGGTTAATTTTTTAAAATGATACAGTTTGGTACTATT TGCTTACAATTGCCTATTACAATCTAAAATATAAATTTTGTACTGATTATCCGTACTGCC AAGTCAATTCCTATTAAGACTCCTAGAAAATTGATTATTTTTAAAGCTGTAGTTCCAGTA GCATTATGACCCATTTAATTACCTGGAGAGTTTTATAATCTGAATTCATTATGTATTTTC CTAGTTATATTCCATTTGAAGCCATAAGGTGGATAGGAATTTAAATACCTTCACTATTGG AAATAGGGATTTGGCAGCTTTAAGTGAAATTGGTTTTCCATTTATATATATGAATAAAAG TTTATCTACACATGAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCCGTAGCCCCTGCACTTATCATCAGATCTCATATAATTGTTGGTAAAGACTCTGCGA GTCTGCACAGGTCAGTTCCCTCCGACCTCCGCGGCTGAAAGTCGGAGTCAGTCCTCCGCC CCCCAGCAGTCGGAAGGTTACGGCCTCGGGAGACCTGGAGGCGGTGGCCGCGGCCCAGGA AGGAGCAGCGGCGGCGCCGGGAAAGAAGCAGGAAGAGAAGACCGTCCTCTCTTAGGAATC CAGCACTGGAGAAACGAGGAAAATTCTCCCAAGGATGGTTTCCCATTCAGAGTTGAGGAA ACTCTTCTGTTCTGCGGATGCAGTGTGCTTTGATGTTGATAGCACGGTCATCAGAGAAGA AGGAATTGATGAGCTGGCCAAGTTCTGTGGAGTTGAGGATGCTGTGTCAGAAATGACACG GCGAGCCATGGGCGGAGCCGTGCCTTTCAAGGCTGCCCTCACAGAGCGCCTGGCCCTGAT CCAGCCCTCCAGGGAGCAGGTGCAGAGGCTCATAGCGGAGCATCCCCCACACCTGACCCC GGGCATAAGGGAGCTGGTAAGTCGCCTACAGGAGCGGAATGTTCAGGTCTTCCTGATCTC CGGCGGCTTCAGGAGCATCGTAGAGCACGTGGCTTCAAAGCTCAACATCCCGTCGACCAA CGTGTTTGCCAACAGGCTGAAATTCTACTTTAACGGTGAATATGCAGGTTTTGATGAGAC GCAGCCAACCGCTGAATCCGGTGGGAAAGGAAAAGTTATTAAATTTTTAAAGGAAAAATT TCATTTTAAGAAAATAGTCATGATTGGAGATGGAGCCACCGACATGGAAGCCTGTCCTCC TGCTGATGTTTTCATTGGATTTGGAGGGAATGTGATCAGGCAACAAGTAAAGGACAACGC GGAATGGTACATCACTGATTTCGTAGAGCTTCTGGGAGAACTGGAAGAATAAGATCAACT TTGATACAGTTCATAACAACTTCAGGTTAATTTTTTAAAATGATACAGTTTGGTACTATT TGCTTACAATTGCCTATTACAATCTAAAATATAAATTTTGTACTGATTATCCGTACTGCC AAGTCAATTCCTATTAAGACTCCTAGAAAATTGATTATTTTTAAAGCTGTAGTTCCAGTA GCATTATGACCCATTTAATTACCTGGAGAGTTTTATAATCTGAATTCATTATGTATTTTC CTAGTTATATTCCATTTGAAGCCATAAGGTGGATAGGAATTTAAATACCTTCACTATTGG AAATAGGGATTTGGCAGCTTTAAGTGAAATTGGTTTTCCATTTATATATATGAATAAAAG TTTATCTACACATGAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 256-375, + strand, RNAz p=0.575393 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 256-375, + strand, RNAz p=0.575393 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-196, gnl|bosTau2|chr25 (23502774-23502586) | |
| 1-196, gnl|canFam2|chr6 (3514047-3514233) | |
| 1-196, gnl|dasNov1|scaffold_150692 (3545-3339) | |
| 1-196, gnl|echTel1|scaffold_285130 (41652-41469) | |
| 1-196, gnl|galGal2|chr19 (4575128-4575279) | |
| 1-196, gnl|hg17|chr7 (55875845-55876013) | |
| 1-196, gnl|Hg17|chr7 (64640857-64640687) | |
| 1-196, gnl|loxAfr1|scaffold_36239 (13709-13525) | |
| 1-196, gnl|mm7|chr5 (129016831-129017016) | |
| 1-196, gnl|Mm7|chr5 (129017036-129016856) | |
| 1-196, gnl|oryCun1|scaffold_214513 (98126-98326) | |
| 1-196, gnl|panTro1|chr6 (57572139-57572307) | |
| 1-196, gnl|rheMac2|chr3 (59295569-59295398) | |
| 1-196, gnl|rn3|chr12 (27847468-27847653) | |
| 256-415, gnl|bosTau2|chr25 (23488102-23487943) | |
| 256-415, gnl|canFam2|chr6 (3500987-3501136) | |
| 256-415, gnl|danRer3|chr16 (26920737-26920588) | |
| 256-415, gnl|dasNov1|scaffold_3534 (5979-5830) | |
| 256-415, gnl|fr1|chrUn (313479054-313479197) | |
| 256-415, gnl|galGal2|chr19 (4568928-4569077) | |
| 256-415, gnl|hg17|chr7 (55862968-55863117) | |
| 256-415, gnl|Hg17|chr7 (55863133-55862974) | |
| 256-415, gnl|loxAfr1|scaffold_16940 (2742-2593) | |
| 256-415, gnl|mm7|chr5 (129009301-129009450) | |
| 256-415, gnl|Mm7|chr5 (129009464-129009307) | |
| 256-415, gnl|monDom2|scaffold_81 (783152-783003) | |
| 256-415, gnl|oryCun1|scaffold_214513 (79044-79193) | |
| 256-415, gnl|panTro1|chr6 (57559285-57559434) | |
| 256-415, gnl|rheMac2|chr3 (59322997-59322848) | |
| 256-415, gnl|rn3|chr12 (27838990-27839139) | |
| 256-415, gnl|tetNig1|chr10 (10561914-10562057) | |
| 256-415, gnl|xenTro1|scaffold_63 (1134132-1134281) | |
| 548-697, gnl|bosTau2|chr25 (23485563-23485414) | |
| 548-697, gnl|canFam2|chr6 (3499735-3499567) | |
| 548-697, gnl|danRer3|chr16 (26923195-26923348) | |
| 548-697, gnl|fr1|chrUn (313478618-313478451) | |
| 548-697, gnl|hg17|chr7 (55606685-55606853) | |
| 548-697, gnl|Hg17|chr7 (55859283-55859134) | |
| 548-697, gnl|loxAfr1|scaffold_16940 (4257-4426) | |
| 548-697, gnl|mm7|chr5 (129007225-129007066) | |
| 548-697, gnl|Mm7|chr5 (129007218-129007069) | |
| 548-697, gnl|monDom2|scaffold_81 (786356-786523) | |
| 548-697, gnl|panTro1|chr6_random (45020001-45020170) | |
| 548-697, gnl|rheMac2|chr3 (70389887-70389724) | |
| 548-697, gnl|rn3|chr12 (27837012-27836844) | |
| 548-697, gnl|tetNig1|chr10 (10561637-10561480) | |
| 548-697, gnl|xenTro1|scaffold_63 (1129219-1129058) | |
| 845-1192, gnl|bosTau2|chr25 (23481236-23480891) | |
| 845-1192, gnl|Hg17|chr7 (55853771-55853442) | |
| 1201-1342, gnl|bosTau2|chr25 (23480858-23480716) | |
| 1201-1342, gnl|canFam2|chr6 (3495427-3495220) | |
| 1201-1342, gnl|dasNov1|scaffold_3534 (12793-12991) | |
| 1201-1342, gnl|echTel1|scaffold_319680 (39041-39270) | |
| 1201-1342, gnl|hg17|chr7 (55615359-55615576) | |
| 1201-1342, gnl|Hg17|chr7 (55853105-55852962) | |
| 1201-1342, gnl|loxAfr1|scaffold_16940 (8895-9107) | |
| 1201-1342, gnl|mm7|chr5 (129003540-129003331) | |
| 1201-1342, gnl|Mm7|chr5 (129003448-129003325) | |
| 1201-1342, gnl|oryCun1|scaffold_101110 (5280-5065) | |
| 1201-1342, gnl|panTro1|chr6 (57299398-57299619) | |
| 1201-1342, gnl|rheMac2|chr3 (70127548-70127763) | |
| 1201-1342, gnl|rn3|chr12 (27833282-27833084) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-196, gnl|bosTau2|chr25 (23502774-23502586) | |
| 1-196, gnl|canFam2|chr6 (3514047-3514233) | |
| 1-196, gnl|dasNov1|scaffold_150692 (3545-3339) | |
| 1-196, gnl|echTel1|scaffold_285130 (41652-41469) | |
| 1-196, gnl|galGal2|chr19 (4575128-4575279) | |
| 1-196, gnl|hg17|chr7 (55875845-55876013) | |
| 1-196, gnl|Hg17|chr7 (64640857-64640687) | |
| 1-196, gnl|loxAfr1|scaffold_36239 (13709-13525) | |
| 1-196, gnl|mm7|chr5 (129016831-129017016) | |
| 1-196, gnl|Mm7|chr5 (129017036-129016856) | |
| 1-196, gnl|oryCun1|scaffold_214513 (98126-98326) | |
| 1-196, gnl|panTro1|chr6 (57572139-57572307) | |
| 1-196, gnl|rheMac2|chr3 (59295569-59295398) | |
| 1-196, gnl|rn3|chr12 (27847468-27847653) | |
| 256-415, gnl|bosTau2|chr25 (23488102-23487943) | |
| 256-415, gnl|canFam2|chr6 (3500987-3501136) | |
| 256-415, gnl|danRer3|chr16 (26920737-26920588) | |
| 256-415, gnl|dasNov1|scaffold_3534 (5979-5830) | |
| 256-415, gnl|fr1|chrUn (313479054-313479197) | |
| 256-415, gnl|galGal2|chr19 (4568928-4569077) | |
| 256-415, gnl|hg17|chr7 (55862968-55863117) | |
| 256-415, gnl|Hg17|chr7 (55863133-55862974) | |
| 256-415, gnl|loxAfr1|scaffold_16940 (2742-2593) | |
| 256-415, gnl|mm7|chr5 (129009301-129009450) | |
| 256-415, gnl|Mm7|chr5 (129009464-129009307) | |
| 256-415, gnl|monDom2|scaffold_81 (783152-783003) | |
| 256-415, gnl|oryCun1|scaffold_214513 (79044-79193) | |
| 256-415, gnl|panTro1|chr6 (57559285-57559434) | |
| 256-415, gnl|rheMac2|chr3 (59322997-59322848) | |
| 256-415, gnl|rn3|chr12 (27838990-27839139) | |
| 256-415, gnl|tetNig1|chr10 (10561914-10562057) | |
| 256-415, gnl|xenTro1|scaffold_63 (1134132-1134281) | |
| 548-697, gnl|bosTau2|chr25 (23485563-23485414) | |
| 548-697, gnl|canFam2|chr6 (3499735-3499567) | |
| 548-697, gnl|danRer3|chr16 (26923195-26923348) | |
| 548-697, gnl|fr1|chrUn (313478618-313478451) | |
| 548-697, gnl|hg17|chr7 (55606685-55606853) | |
| 548-697, gnl|Hg17|chr7 (55859283-55859134) | |
| 548-697, gnl|loxAfr1|scaffold_16940 (4257-4426) | |
| 548-697, gnl|mm7|chr5 (129007225-129007066) | |
| 548-697, gnl|Mm7|chr5 (129007218-129007069) | |
| 548-697, gnl|monDom2|scaffold_81 (786356-786523) | |
| 548-697, gnl|panTro1|chr6_random (45020001-45020170) | |
| 548-697, gnl|rheMac2|chr3 (70389887-70389724) | |
| 548-697, gnl|rn3|chr12 (27837012-27836844) | |
| 548-697, gnl|tetNig1|chr10 (10561637-10561480) | |
| 548-697, gnl|xenTro1|scaffold_63 (1129219-1129058) | |
| 845-1192, gnl|bosTau2|chr25 (23481236-23480891) | |
| 845-1192, gnl|Hg17|chr7 (55853771-55853442) | |
| 1201-1342, gnl|bosTau2|chr25 (23480858-23480716) | |
| 1201-1342, gnl|canFam2|chr6 (3495427-3495220) | |
| 1201-1342, gnl|dasNov1|scaffold_3534 (12793-12991) | |
| 1201-1342, gnl|echTel1|scaffold_319680 (39041-39270) | |
| 1201-1342, gnl|hg17|chr7 (55615359-55615576) | |
| 1201-1342, gnl|Hg17|chr7 (55853105-55852962) | |
| 1201-1342, gnl|loxAfr1|scaffold_16940 (8895-9107) | |
| 1201-1342, gnl|mm7|chr5 (129003540-129003331) | |
| 1201-1342, gnl|Mm7|chr5 (129003448-129003325) | |
| 1201-1342, gnl|oryCun1|scaffold_101110 (5280-5065) | |
| 1201-1342, gnl|panTro1|chr6 (57299398-57299619) | |
| 1201-1342, gnl|rheMac2|chr3 (70127548-70127763) | |
| 1201-1342, gnl|rn3|chr12 (27833282-27833084) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cut (0.509771) | |
| sme (0.305437) | |
| eli (0.303628) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| cki (0.165235) | |
| csk (0.140746) | |
| ret (0.128733) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.509771) | |
| sme (0.305437) | |
| eli (0.303628) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| cki (0.165235) | |
| csk (0.140746) | |
| ret (0.128733) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| cty (0.10408) |