Non-Coding RNA Search

Ss1.1-Pig3-SRG8019E13.5

Sequence:


               
               CCGGCCCACCGCGGGCCAAGCACCGCCGCCATGTCGGCCTACCCCAGAAGCTATAACCCG
TTCGATGATGACGCGGAGGACGAGGGCGCCCGGCCAGCGCCGTGGACTGATGCCCGCAAC
CTCACGGACGGGCCCGAGTCGCCCGCTGACCGGCAGCAGGCCCTGCGGCAGGAGGTGCTG
CGCCGGGCCGAGGCCACGGTCGCCAGCACGGGAAGGTCCCTGTCCCTCATGTACGAGTCC
GAGAGGATAGGAGTCGCCTCTTCTGAGGAGCTTGTCCGTCAGCGTGGGGCCTTGGAGCGC
ACAGAGAAGATGGTGGACAAAATGGAGCAGGACCTGAAGACCAGCCAGAAGCACATCAAC
AGCATCAAGAGTGTGTTCGGAGGGCTCGTCAACTACTTCAAGTCTAAACCTGTGGAGACC
TCGCCTACACAGAACGGCACCCTTGCCCCCGAGCCCAGCAGCAGATTGAAAGAAGCCATA
AGTATAAGCAAAGACCAGGAGGCACGGTTCCAGGCCAGCCACCCAAACCTCAGGAGGCTG
AATGACTCAGACTGCATCCCTGGAGGGGCTGGATCTGCTGTGAGCTCTGAGGCGTATCCA
AAGAACCCTCACCTCCAAGCCTATCATCAGAAAATCGACAGCAATCTGGATGAGCTGTCC
GTGGGCCTGGGCCGTCTGAAGGACATTGCCCTGGGCATGCAGACGGAGATCGAGGAGCAG
GACGACATTCTCGACCGCCTCACAACCAAAGTGGACAAACTGGATATCAACATAAAAAGC
ACGGAGAAAAAAGTGCGCCAACTTTGAAGACAAAGGATTTCCACTCCATAGTGATGAAAA
GATTTGAAAGGTGTTTTAAATTCCCTGGAAACTTCGCTCATTACTTTTGAATGTGATTTA
ACATGTGTTTGCAAACATTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCCACCGCGGGCCAAGCACCGCCGCCATGTCGGCCTACCCCAGAAGCTATAACCCG
TTCGATGATGACGCGGAGGACGAGGGCGCCCGGCCAGCGCCGTGGACTGATGCCCGCAAC
CTCACGGACGGGCCCGAGTCGCCCGCTGACCGGCAGCAGGCCCTGCGGCAGGAGGTGCTG
CGCCGGGCCGAGGCCACGGTCGCCAGCACGGGAAGGTCCCTGTCCCTCATGTACGAGTCC
GAGAGGATAGGAGTCGCCTCTTCTGAGGAGCTTGTCCGTCAGCGTGGGGCCTTGGAGCGC
ACAGAGAAGATGGTGGACAAAATGGAGCAGGACCTGAAGACCAGCCAGAAGCACATCAAC
AGCATCAAGAGTGTGTTCGGAGGGCTCGTCAACTACTTCAAGTCTAAACCTGTGGAGACC
TCGCCTACACAGAACGGCACCCTTGCCCCCGAGCCCAGCAGCAGATTGAAAGAAGCCATA
AGTATAAGCAAAGACCAGGAGGCACGGTTCCAGGCCAGCCACCCAAACCTCAGGAGGCTG
AATGACTCAGACTGCATCCCTGGAGGGGCTGGATCTGCTGTGAGCTCTGAGGCGTATCCA
AAGAACCCTCACCTCCAAGCCTATCATCAGAAAATCGACAGCAATCTGGATGAGCTGTCC
GTGGGCCTGGGCCGTCTGAAGGACATTGCCCTGGGCATGCAGACGGAGATCGAGGAGCAG
GACGACATTCTCGACCGCCTCACAACCAAAGTGGACAAACTGGATATCAACATAAAAAGC
ACGGAGAAAAAAGTGCGCCAACTTTGAAGACAAAGGATTTCCACTCCATAGTGATGAAAA
GATTTGAAAGGTGTTTTAAATTCCCTGGAAACTTCGCTCATTACTTTTGAATGTGATTTA
ACATGTGTTTGCAAACATTGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55732524|emb|CAH92962.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55732524|emb|CAH92962.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-268, gnl|bosTau2|chr17 (45230912-45230645)
               

               
               1-268, gnl|Hg17|chr22 (19537917-19538190)
               

               
               1-268, gnl|Mm7|chr16 (16955823-16956093)
               


               
               649-923, gnl|bosTau2|chr17 (45222071-45221795)
               

               
               649-923, gnl|Hg17|chr22 (19566520-19566798)
               

               
               649-923, gnl|Mm7|chr16 (16977875-16978143)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-268, gnl|bosTau2|chr17 (45230912-45230645)
               

               
               1-268, gnl|Hg17|chr22 (19537917-19538190)
               

               
               1-268, gnl|Mm7|chr16 (16955823-16956093)
               


               
               649-923, gnl|bosTau2|chr17 (45222071-45221795)
               

               
               649-923, gnl|Hg17|chr22 (19566520-19566798)
               

               
               649-923, gnl|Mm7|chr16 (16977875-16978143)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-268, gnl\|bosTau2\|chr17 (45230912-45230645)
	1-268, gnl\|Hg17\|chr22 (19537917-19538190)
	1-268, gnl\|Mm7\|chr16 (16955823-16956093)

	649-923, gnl\|bosTau2\|chr17 (45222071-45221795)
	649-923, gnl\|Hg17\|chr22 (19566520-19566798)
	649-923, gnl\|Mm7\|chr16 (16977875-16978143)