Non-Coding RNA Search

Ss1.1-Pig3-SRG8019F11.3

Sequence:


               
               CTTCGTCGTGCTACTGATGAAATGAAAGCATATGTCTCTTCTGATCAACAAGAAAAAAGA
AAGGCAATTAGGGAACAATATACCAAAAATATTACTGAACAAGAAAACCTTGGAAAGAAA
CTCCGGGAAAAACAAAAAGCTGTACGAGAAAGTCATGGTCCAAATATGAAACAAGCAAAA
ATGTGGCGTGATTTTGAACAGTTGATGGAATGTAAGAAACAGTGCTTTCTGAAACAACAA
AGCCAAACTTCCATTGGTCAGGTAATTCAGGAGGGAGGAGAGGACCGGCTGATCCTCTGA
GTTCATGTGTCATCAGTTGGGGTTTTAGGCGATATTGCTAGCTATAAGCATAATTCCATG
GTGTACTTCTTTTCTTGAAAGTGATTTGTACAACGTCTTGGTTTCATATTAGCCATTCCC
TATTAACTTTTCTTGGAAAATAATGTTAAGATAGTTTTAGGTTTTAAAAGTTTTTTAATA
AGAAAAAGGAGTTTTTATTATTTTGCTTAGTTTAGACATCAGTGGTGTCTTCTGAGTTTT
ATGAGGCAGGACACTGAGTTTACTATGTGTAAATGTAAGCATATGTCCATTAAGAAGCAT
GTAGGGTTTTTTTAATGTAATATCCCAATAGCTTAATGTTTTTTCTTAATCTTTTTTTAA
CTTTAGAGGAATCTTTTAGGAACTATTATCTCTTGTTTTGAAGAAACATTTATCTGAAGT
TCAGCAATTTCCTACAGTTTCACTTCAGTTTCTTTTTCTTCTGTAAAATTCAAGAAAATT
TAAAATTTTAAATAACGTATTTGTTCTATTTGTATTGTGAAAAGGCAAATAAAACTTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGTCGTGCTACTGATGAAATGAAAGCATATGTCTCTTCTGATCAACAAGAAAAAAGA
AAGGCAATTAGGGAACAATATACCAAAAATATTACTGAACAAGAAAACCTTGGAAAGAAA
CTCCGGGAAAAACAAAAAGCTGTACGAGAAAGTCATGGTCCAAATATGAAACAAGCAAAA
ATGTGGCGTGATTTTGAACAGTTGATGGAATGTAAGAAACAGTGCTTTCTGAAACAACAA
AGCCAAACTTCCATTGGTCAGGTAATTCAGGAGGGAGGAGAGGACCGGCTGATCCTCTGA
GTTCATGTGTCATCAGTTGGGGTTTTAGGCGATATTGCTAGCTATAAGCATAATTCCATG
GTGTACTTCTTTTCTTGAAAGTGATTTGTACAACGTCTTGGTTTCATATTAGCCATTCCC
TATTAACTTTTCTTGGAAAATAATGTTAAGATAGTTTTAGGTTTTAAAAGTTTTTTAATA
AGAAAAAGGAGTTTTTATTATTTTGCTTAGTTTAGACATCAGTGGTGTCTTCTGAGTTTT
ATGAGGCAGGACACTGAGTTTACTATGTGTAAATGTAAGCATATGTCCATTAAGAAGCAT
GTAGGGTTTTTTTAATGTAATATCCCAATAGCTTAATGTTTTTTCTTAATCTTTTTTTAA
CTTTAGAGGAATCTTTTAGGAACTATTATCTCTTGTTTTGAAGAAACATTTATCTGAAGT
TCAGCAATTTCCTACAGTTTCACTTCAGTTTCTTTTTCTTCTGTAAAATTCAAGAAAATT
TAAAATTTTAAATAACGTATTTGTTCTATTTGTATTGTGAAAAGGCAAATAAAACTTGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|11493805|gb|AAG35651.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|11493805|gb|AAG35651.1|

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               116-840, gnl|bosTau2|chr17 (30449906-30449181)
               

               
               116-840, gnl|Hg17|chr12 (109118567-109119291)
               

               
               116-840, gnl|Mm7|chr5 (121785427-121784747)
               


               
               650-789, gnl|bosTau2|chr11 (53683986-53683844)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-840, gnl|bosTau2|chr17 (30449906-30449181)
               

               
               116-840, gnl|Hg17|chr12 (109118567-109119291)
               

               
               116-840, gnl|Mm7|chr5 (121785427-121784747)
               


               
               650-789, gnl|bosTau2|chr11 (53683986-53683844)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               tes (0.207814)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	116-840, gnl\|bosTau2\|chr17 (30449906-30449181)
	116-840, gnl\|Hg17\|chr12 (109118567-109119291)
	116-840, gnl\|Mm7\|chr5 (121785427-121784747)

	650-789, gnl\|bosTau2\|chr11 (53683986-53683844)

	tes (0.207814)
	ski (0.146735)
	hyp (0.142837)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)