Non-Coding RNA Search

Ss1.1-Pig3-SRG8019G05.5

Sequence:


               
               CCACCCTGGCCCCCTCCAGCTATGAGGCACCTTTCTCTGATCACTATGTCCTAGAAGCTA
TTTTTAGCTTGTGTCAGTCACACAGAGGCCCTGCCCAGATGACGCCCAGACCTCCAGGCC
CGGGTGGTCTGATGCCTGGAGAGCACATAGGTCCCCGAGGTGGGGTGGGGGGGGTGGAGT
GCCTGGGTCCCAAAAATGTCCTCAATATAGGCTTAGAACTGGGCCAGAAGGCCGTCCGTG
AGTCCCAGTCTGTTCCAGGAGGGCCCTGAGCAAGCCCACAGTGAGAGGGGTCTCTGCCCC
AGGCTCAGGGAATGGGGTGGGGGGTTCCGCCTCATCTGAGAGGTGTGTCCGCAAGAGCAG
CAGGAGCTCGGCTGGAGCTAGGTCTGGTGGGCACAGGCGGCAAAGAAGGGGGAGGTGAGC
ATCAAGCCGGCGGTGCCGGGCAAACTCGGCCAACAGCAGTTTGAAGATCTCACTTCGAAG
CAGGGGGCTGGAGGGGCTGAGGGCCAGACCAGCCTCTAGAGCCCGCTCCCACTGTTCCTT
TTGCACTAGCTGCCCCACAGCTTGGAGCACAGCTTTGGGCCGCCCACTGCCCAAGAGCAG
GTCTAGCTCCAGTGCCTCTGGCCGAGTCCCCTCCTCACCTAGCACTGCCAGGGCTCGGCG
GTAGAGGGGCAGCCCTGGGCCTCCTGCCCCCCAGCCAGGCCCGCCCTGCTGCTGTGCCAG
TTCCACAAAGGGTGGGAGCCACTGCGGCTCCAGCCGGCACAGGCATTGGCACAGGAGTTC
AAACAGGGGTAGTATCCCATTGGGTGGTTCCTTCCCAGCTGCTGTACCCCCTAGTACTTT
CTTCCACACATCAGGGGGAGCTTGGGACCTCAGCCTGCCATTCTCATCTGGCTGGAGCTG
CAGGGCCCTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCTGGCCCCCTCCAGCTATGAGGCACCTTTCTCTGATCACTATGTCCTAGAAGCTA
TTTTTAGCTTGTGTCAGTCACACAGAGGCCCTGCCCAGATGACGCCCAGACCTCCAGGCC
CGGGTGGTCTGATGCCTGGAGAGCACATAGGTCCCCGAGGTGGGGTGGGGGGGGTGGAGT
GCCTGGGTCCCAAAAATGTCCTCAATATAGGCTTAGAACTGGGCCAGAAGGCCGTCCGTG
AGTCCCAGTCTGTTCCAGGAGGGCCCTGAGCAAGCCCACAGTGAGAGGGGTCTCTGCCCC
AGGCTCAGGGAATGGGGTGGGGGGTTCCGCCTCATCTGAGAGGTGTGTCCGCAAGAGCAG
CAGGAGCTCGGCTGGAGCTAGGTCTGGTGGGCACAGGCGGCAAAGAAGGGGGAGGTGAGC
ATCAAGCCGGCGGTGCCGGGCAAACTCGGCCAACAGCAGTTTGAAGATCTCACTTCGAAG
CAGGGGGCTGGAGGGGCTGAGGGCCAGACCAGCCTCTAGAGCCCGCTCCCACTGTTCCTT
TTGCACTAGCTGCCCCACAGCTTGGAGCACAGCTTTGGGCCGCCCACTGCCCAAGAGCAG
GTCTAGCTCCAGTGCCTCTGGCCGAGTCCCCTCCTCACCTAGCACTGCCAGGGCTCGGCG
GTAGAGGGGCAGCCCTGGGCCTCCTGCCCCCCAGCCAGGCCCGCCCTGCTGCTGTGCCAG
TTCCACAAAGGGTGGGAGCCACTGCGGCTCCAGCCGGCACAGGCATTGGCACAGGAGTTC
AAACAGGGGTAGTATCCCATTGGGTGGTTCCTTCCCAGCTGCTGTACCCCCTAGTACTTT
CTTCCACACATCAGGGGGAGCTTGGGACCTCAGCCTGCCATTCTCATCTGGCTGGAGCTG
CAGGGCCCTAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10438914|dbj|BAB15378.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10438914|dbj|BAB15378.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               77-421, - strand, RNAz p=0.942074
               

               
               662-781, - strand, RNAz p=0.761002

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-421, - strand, RNAz p=0.942074
               

               
               662-781, - strand, RNAz p=0.761002

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_024747, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024747, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-912, gnl|bosTau2|chr26 (14416144-14417048)
               

               
               1-912, gnl|Hg17|chr10 (103817703-103816785)
               

               
               1-912, gnl|Mm7|chr19 (45902639-45901733)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr26 (14416144-14417048)
               

               
               1-912, gnl|Hg17|chr10 (103817703-103816785)
               

               
               1-912, gnl|Mm7|chr19 (45902639-45901733)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nco (0.161734)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cag (0.151194)

	77-421, - strand, RNAz p=0.942074
	662-781, - strand, RNAz p=0.761002

	1-912, gnl\|bosTau2\|chr26 (14416144-14417048)
	1-912, gnl\|Hg17\|chr10 (103817703-103816785)
	1-912, gnl\|Mm7\|chr19 (45902639-45901733)