Non-Coding RNA Search

Ss1.1-Pig3-SRG8019G20.3

Sequence:


               
               AGAGCCCCGAGGCGGCGGAGTTAGCACCACAGCAACATTGGGGCCTGGGACAGCGGGACC
TGGGCCAGGGGTCTCAGCAGTGAGCGGGGCCCTCCGGGAACTGTTGGAGGCCTGTCGCAA
TGGGGACGTGTCCCGGGTAAAGAGGCTGGTGGACGCAGCAAACGTGAATGCTAAGGACAT
GGCCGGCCGGAAATCTTCTCCCCTGCACTTCGCTGCAGGTCAGAGACTTTTAAATTGCTT
ATTAAGGGCTTTGATGTTGGGACCGGGGAGTGGGTGGTAGGGGTGGTCGCGGTCTCATTC
CGCTTCATAATGCCTGTTCTTTTGGCCATGCTGAGGTTGTGAGTCTGTTACTGTGCCAAG
GAGCTGATCCAAATGCCAGGGATAACTGGAACTATACCCCTCTGCATGAAGCTGCTATTA
AAGGAAAGATCGATGTATGTATTGTGCTGCTGCAGCACGGAGCGGATCCAAACATTCGGA
ACACCGATGGGAAGTCAGCCCTGGACCTGGCAGATCCTTCAGCAAAAGCTGTCCTTACAG
GTAAGAAAACAGAGCTACCAGATTATTTTGTGTACTAGCTTGCTTTTATAAAAATCTTTA
TGCATTGTATTATATTTTTCTTTTTCTACTGATAAAAGCTCAGCAAATACATATGCCGTA
ATCTCTACTTTATTATTGATTTGTTATATTAACGGTTTCATTAATTGCTGGAACTAAATT
TTGATGGATTACTGTTAACAAAATTAGTTAATATACAGTCTCTTTAACAGACTACAAGTT
TTCCATCCTAGCACAATGAGAACCATTATAAAGTACAAGTTCTTACTGAATTGGATGGCA
TATTTGGATGTTTTAGGTTGATTCAAGGAAAGTCATCTAATACTAAGGCAAAGTCTTTTT
CTTTATGTTGTTAAAATTGAACACTAGCTATTTTATTAGCAGTGGAAAGCTTTGAGTGGT
TTAAATACCATAGTTCAAGTAATATTTTCAACACGTGCCATAGTCTAGAGAAAAAGCAAT
TTCAAACAAAATTGAATTTTTCAACAATTTTAATTATTGTGATTATATGAAATTGTATTT
AATTGGCATTTCTTTCTCTTTTATATATAAGTATATATATGTGTGTATATATGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCCCGAGGCGGCGGAGTTAGCACCACAGCAACATTGGGGCCTGGGACAGCGGGACC
TGGGCCAGGGGTCTCAGCAGTGAGCGGGGCCCTCCGGGAACTGTTGGAGGCCTGTCGCAA
TGGGGACGTGTCCCGGGTAAAGAGGCTGGTGGACGCAGCAAACGTGAATGCTAAGGACAT
GGCCGGCCGGAAATCTTCTCCCCTGCACTTCGCTGCAGGTCAGAGACTTTTAAATTGCTT
ATTAAGGGCTTTGATGTTGGGACCGGGGAGTGGGTGGTAGGGGTGGTCGCGGTCTCATTC
CGCTTCATAATGCCTGTTCTTTTGGCCATGCTGAGGTTGTGAGTCTGTTACTGTGCCAAG
GAGCTGATCCAAATGCCAGGGATAACTGGAACTATACCCCTCTGCATGAAGCTGCTATTA
AAGGAAAGATCGATGTATGTATTGTGCTGCTGCAGCACGGAGCGGATCCAAACATTCGGA
ACACCGATGGGAAGTCAGCCCTGGACCTGGCAGATCCTTCAGCAAAAGCTGTCCTTACAG
GTAAGAAAACAGAGCTACCAGATTATTTTGTGTACTAGCTTGCTTTTATAAAAATCTTTA
TGCATTGTATTATATTTTTCTTTTTCTACTGATAAAAGCTCAGCAAATACATATGCCGTA
ATCTCTACTTTATTATTGATTTGTTATATTAACGGTTTCATTAATTGCTGGAACTAAATT
TTGATGGATTACTGTTAACAAAATTAGTTAATATACAGTCTCTTTAACAGACTACAAGTT
TTCCATCCTAGCACAATGAGAACCATTATAAAGTACAAGTTCTTACTGAATTGGATGGCA
TATTTGGATGTTTTAGGTTGATTCAAGGAAAGTCATCTAATACTAAGGCAAAGTCTTTTT
CTTTATGTTGTTAAAATTGAACACTAGCTATTTTATTAGCAGTGGAAAGCTTTGAGTGGT
TTAAATACCATAGTTCAAGTAATATTTTCAACACGTGCCATAGTCTAGAGAAAAAGCAAT
TTCAAACAAAATTGAATTTTTCAACAATTTTAATTATTGTGATTATATGAAATTGTATTT
AATTGGCATTTCTTTCTCTTTTATATATAAGTATATATATGTGTGTATATATGTGTGTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-158, + strand, RNAz p=0.946907

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, + strand, RNAz p=0.946907

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-277, gnl|bosTau2|chr27 (17551055-17551333)
               

               
               1-277, gnl|Hg17|chr8 (9451314-9451591)
               

               
               1-277, gnl|Mm7|chr8 (33726586-33726316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr27 (17551055-17551333)
               

               
               1-277, gnl|Hg17|chr8 (9451314-9451591)
               

               
               1-277, gnl|Mm7|chr8 (33726586-33726316)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	1-277, gnl\|bosTau2\|chr27 (17551055-17551333)
	1-277, gnl\|Hg17\|chr8 (9451314-9451591)
	1-277, gnl\|Mm7\|chr8 (33726586-33726316)