Non-Coding RNA Search

Ss1.1-Pig3-SRG8019H01.5

Sequence:


               
               CTTTTCTTCACTAGGTTAGAATAGCAGGCTCCCCCGAGTTTGCTAGAAAAATACTGGAAG
TTTAAAGTGTGGGAGGGCGGTAGGGAGAGACAGAGAAAAGGATTCAGAGGGTGAGGGACC
ATTGCATTTTCTTTCCTGATTCAAAGGGGTTGCAGAATAGCCTAGCATCTCCAAGAGCAT
GGTCCGAACACTCGTGGCATTTGCCATTAGCCGGAAGAAGGAGAAAGAGCGCCTGTTGGA
ACCAAGGTTACGGTGAAAGTTATGGGAAGCTGTATTTCATCGCCCTTATGGCTGCAAGAA
CAAATGGTGTTTATACAAGGACCTTGGCAGTGAGAAAACAGGCATTAAACAGGAATTAAG
GAGCTTGTCATCACCACTTCTTTCCAGTTACAGAAGGCAAAAGCCCTCCAAGCCTTTTTT
ATTGGGCCCTTGTGAGTTCCGCTGTTGGCCGAGCCAGACAGAACTGAATGGAGGAATGGC
GAGGTGCATGTGCGCATGTGCGCGTGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TATAGAGGGAGCAAGCCTCTCGGCTTACAGAAGCGCACAGGCTGGTGTCACAAGCATGAT
TTTATTGTCCTGNGCACTGATGGCCAGGTATGTTTTTGTGCTCCCCTGGCANGTAACACC
ACGAAAGATATTCAAGTGTCCTGAGTGCACAGCCATTGATGGGCTCTCGCTCGACCAGAC
ACACATGGTGGAGAGGTCTGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCTTCACTAGGTTAGAATAGCAGGCTCCCCCGAGTTTGCTAGAAAAATACTGGAAG
TTTAAAGTGTGGGAGGGCGGTAGGGAGAGACAGAGAAAAGGATTCAGAGGGTGAGGGACC
ATTGCATTTTCTTTCCTGATTCAAAGGGGTTGCAGAATAGCCTAGCATCTCCAAGAGCAT
GGTCCGAACACTCGTGGCATTTGCCATTAGCCGGAAGAAGGAGAAAGAGCGCCTGTTGGA
ACCAAGGTTACGGTGAAAGTTATGGGAAGCTGTATTTCATCGCCCTTATGGCTGCAAGAA
CAAATGGTGTTTATACAAGGACCTTGGCAGTGAGAAAACAGGCATTAAACAGGAATTAAG
GAGCTTGTCATCACCACTTCTTTCCAGTTACAGAAGGCAAAAGCCCTCCAAGCCTTTTTT
ATTGGGCCCTTGTGAGTTCCGCTGTTGGCCGAGCCAGACAGAACTGAATGGAGGAATGGC
GAGGTGCATGTGCGCATGTGCGCGTGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TATAGAGGGAGCAAGCCTCTCGGCTTACAGAAGCGCACAGGCTGGTGTCACAAGCATGAT
TTTATTGTCCTGNGCACTGATGGCCAGGTATGTTTTTGTGCTCCCCTGGCANGTAACACC
ACGAAAGATATTCAAGTGTCCTGAGTGCACAGCCATTGATGGGCTCTCGCTCGACCAGAC
ACACATGGTGGAGAGGTCTGAGTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-506, gnl|bosTau2|chr15 (47175249-47174755)
               

               
               1-506, gnl|Hg17|chr11 (44213811-44214303)
               

               
               1-506, gnl|Mm7|chr2 (93554599-93554106)
               


               
               526-737, gnl|bosTau2|chr15 (47174771-47174555)
               

               
               526-737, gnl|Hg17|chr11 (44214287-44214503)
               

               
               526-737, gnl|Mm7|chr2 (93554132-93553908)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-506, gnl|bosTau2|chr15 (47175249-47174755)
               

               
               1-506, gnl|Hg17|chr11 (44213811-44214303)
               

               
               1-506, gnl|Mm7|chr2 (93554599-93554106)
               


               
               526-737, gnl|bosTau2|chr15 (47174771-47174555)
               

               
               526-737, gnl|Hg17|chr11 (44214287-44214503)
               

               
               526-737, gnl|Mm7|chr2 (93554132-93553908)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-506, gnl\|bosTau2\|chr15 (47175249-47174755)
	1-506, gnl\|Hg17\|chr11 (44213811-44214303)
	1-506, gnl\|Mm7\|chr2 (93554599-93554106)

	526-737, gnl\|bosTau2\|chr15 (47174771-47174555)
	526-737, gnl\|Hg17\|chr11 (44214287-44214503)
	526-737, gnl\|Mm7\|chr2 (93554132-93553908)