Non-Coding RNA Search

Ss1.1-Pig3-SRG8019I01.3

Sequence:


               
               CCCTAGATCCCAAAGCCTCGTGTTGCTCATGACATTGGCCTCCTTGCTTGGCTTGTTTAG
CAAATGCGCACAGCGAANAAGGAAGGTGGCTGTTGGTGGCAGTCCTGTAAGCTCCTCAGG
AAATCCCGTGACAGACTGGCCTCTGGTGGGTGCAATGATTAGGGTGCAATTCCTTGGAAA
GTCCCAGAACCAGTAGAGGGCAAATCTGTGCTCCTGGAGAAGCAGGCTTGGAGTTCCTGC
AGCGTGTAGTCTGTATGTACGTGTGTGCGTGTGTGTTTGTATATTATATATTATACAGGG
GAAAGGGCAGAGTTGAAACAAAGCGAAGGCAATTCCCACTGCCTCCTTGCCTAACTTCTC
AAAACTATGCAGGAGTCAGACGGCTGCCAAATGAAAATATCTTCCACAGACACTGCTGGA
TACTGTGACTTCATGAAGAAGAATGTTCAGGACAATGCAGGGGTCTCATCCAAAATAAAC
GGCATTAACAAATACTCCACGCCTTTGGGTTTGTCACATGTGTTACCAGGTGAACTGTGA
CTCCATGGATCTCAGTGGCCTGAGTGCCAAGCTGAACGGGCGAGCTCTGCTTGGCCCACT
TGGCTTGTTAGCAGAGCCTTAGGGGGCCTCCTCCCCGCATCCAAGTGTTTTGACTCAAAG
CTGCAGTGGTTAGTTAGCTAGGCATTCTTGCCTTAAACTCCCACTGAAGGGGGCGAGACG
AATCCTTCCCTCTCGTGTGTCGTCTGGCCTGCCTAACCCAGCGGCCGCCAGCTGCTCCTG
CTCCCTCCTGCCCATGCCTGTCGATGTGTGTGACTTGCTTCGGAAACCCCTACCTGCCAC
TTCAACAGTGTTGATGTTCTGTCTGTGGATATGTAGTCATCCTCTCAACTTGCAAATGTT
TAATTTAAACTATTTAAGAGAACGGAGGTTCCATTTATTGTATATATTTTTCTAAACACC
AAATAAAGCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTAGATCCCAAAGCCTCGTGTTGCTCATGACATTGGCCTCCTTGCTTGGCTTGTTTAG
CAAATGCGCACAGCGAANAAGGAAGGTGGCTGTTGGTGGCAGTCCTGTAAGCTCCTCAGG
AAATCCCGTGACAGACTGGCCTCTGGTGGGTGCAATGATTAGGGTGCAATTCCTTGGAAA
GTCCCAGAACCAGTAGAGGGCAAATCTGTGCTCCTGGAGAAGCAGGCTTGGAGTTCCTGC
AGCGTGTAGTCTGTATGTACGTGTGTGCGTGTGTGTTTGTATATTATATATTATACAGGG
GAAAGGGCAGAGTTGAAACAAAGCGAAGGCAATTCCCACTGCCTCCTTGCCTAACTTCTC
AAAACTATGCAGGAGTCAGACGGCTGCCAAATGAAAATATCTTCCACAGACACTGCTGGA
TACTGTGACTTCATGAAGAAGAATGTTCAGGACAATGCAGGGGTCTCATCCAAAATAAAC
GGCATTAACAAATACTCCACGCCTTTGGGTTTGTCACATGTGTTACCAGGTGAACTGTGA
CTCCATGGATCTCAGTGGCCTGAGTGCCAAGCTGAACGGGCGAGCTCTGCTTGGCCCACT
TGGCTTGTTAGCAGAGCCTTAGGGGGCCTCCTCCCCGCATCCAAGTGTTTTGACTCAAAG
CTGCAGTGGTTAGTTAGCTAGGCATTCTTGCCTTAAACTCCCACTGAAGGGGGCGAGACG
AATCCTTCCCTCTCGTGTGTCGTCTGGCCTGCCTAACCCAGCGGCCGCCAGCTGCTCCTG
CTCCCTCCTGCCCATGCCTGTCGATGTGTGTGACTTGCTTCGGAAACCCCTACCTGCCAC
TTCAACAGTGTTGATGTTCTGTCTGTGGATATGTAGTCATCCTCTCAACTTGCAAATGTT
TAATTTAAACTATTTAAGAGAACGGAGGTTCCATTTATTGTATATATTTTTCTAAACACC
AAATAAAGCTAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               194-972, gnl|bosTau2|chr1 (84474252-84473457)
               

               
               194-972, gnl|Hg17|chr16 (22265520-22264771)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-972, gnl|bosTau2|chr1 (84474252-84473457)
               

               
               194-972, gnl|Hg17|chr16 (22265520-22264771)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

	194-972, gnl\|bosTau2\|chr1 (84474252-84473457)
	194-972, gnl\|Hg17\|chr16 (22265520-22264771)