Non-Coding RNA Search

Ss1.1-Pig3-SRG8019J15.5

Sequence:


               
               TGAAGTAGTCGACACCTGTTTGTATAAGGGAAGTCGAGACAACATGAGTGTGATATTGAT
CTGTTTTCCAAATGCACCCAAAGTATCACCAGAAGCAGTGAAGAAGGAGGCAGAGTTGGA
CAAGTACCTGGAAAGCAGAGTAGAAGAAATCATAAAGAAGCAGGGGGAAGGCGTCCCTGA
CTTAGTCCATGTGATGCGCACATTAGCGAGTGAGAACATCCCCAGCCTCCCACCAGGGGG
TGAATTGGCAAGCAAGCGGAATGTAATTGAAGCCGTTTACAATAGACTGAATCCTTACAA
AAATGATGACACTGATTCTACATCAACTGATGATATGTGGTAAAACTGCTCATCTGGCCA
TGAAGTTTACCTTCACCTCCAAAGCAAAGTACAGCTCAACTTCACTGAACCTTTTAAACA
TCCATCCTCAACTTGTAAGGAATATATGACGTGGGTGAGAATGATTACACCAGAGAACGT
CAGCAGTACAACAGCTAGCCCAGAACTGATTTTTTTTTTTTTTTTGTAAATTTGCGACTT
ATGTAAACGTGATTTTAAATCATAATTCATGTTGTAAATCAGACTCCAGCAATTTTTGTT
GTATGATTTTGTTTTTTGTAAAGTATAATTGTCCTTGTACAAAATGCTCATATTTAATTA
TGAACTGCTTTAAATCACTATCAAAGTTATAAGAAATGTTTGGCTTGTTGTGTGATGCAA
CAGATATATAGCCTTTTCAAGTCATTTTGTGTCTGGCCTTGGGGTTGGGACAGGGAGAGC
AGCAGCCATATCAGCTAGAAATTCAAAAGTGCATGTGATTTGGAGAAGTATTCCAAAATT
TTACAAAGCTGAACACCCATGGAGTTAATCAAAAACTATCTCAATGTTCTTAGCAGTGGG
ACTGGCATTGTTGATAAAGCTGGTCCCTACATTTAACTCTCTTTTAGGTTGTTCTCTCCT
TGTTGCCATGAGTATTGCAGGTAATACAATATATTCATAAGAATATCAATCTTGAGGCTA
AAATGCCTTGATTCTTTGCACCTCTTTTACAAGTCTTACATTTAATTACTAATTGATAAG
CAGCAGCTTCCTACAAATAGTGGGAGACTGCCACATTTTTGCTATCATGATTGGCTGGGC
CTGCTGCTGTTCCTAGTAAGATATTCTGAATTCCATTTTATCAATAAAGCTTGATTTAAC
AAACAAGACATTTAATCATGTATGTGTAATTCCTCCTTTTCCCGGTCCTTATTTTAAGAC
ACCATGCCATTGTAAATGAGAAATTTCTCATGGGGAAAGATGTTAGTCTCTTTTAATTGG
AAAATACTGTGACTCAAAGGCATAGATGGAACTGTTTCCCTTCTATTAGAATGACTATAA
AAGATTTAAGTCTCTGTTGTTCCATAATATATTTTAATGGGTTTCTTTCTAGCTGCTTAT
TTTTTCATTAAGGTGTGTATCAGCCTGAATTTGCCTATCATTTAATTAAAATAATTGTCA
AAGCTTGACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTAGTCGACACCTGTTTGTATAAGGGAAGTCGAGACAACATGAGTGTGATATTGAT
CTGTTTTCCAAATGCACCCAAAGTATCACCAGAAGCAGTGAAGAAGGAGGCAGAGTTGGA
CAAGTACCTGGAAAGCAGAGTAGAAGAAATCATAAAGAAGCAGGGGGAAGGCGTCCCTGA
CTTAGTCCATGTGATGCGCACATTAGCGAGTGAGAACATCCCCAGCCTCCCACCAGGGGG
TGAATTGGCAAGCAAGCGGAATGTAATTGAAGCCGTTTACAATAGACTGAATCCTTACAA
AAATGATGACACTGATTCTACATCAACTGATGATATGTGGTAAAACTGCTCATCTGGCCA
TGAAGTTTACCTTCACCTCCAAAGCAAAGTACAGCTCAACTTCACTGAACCTTTTAAACA
TCCATCCTCAACTTGTAAGGAATATATGACGTGGGTGAGAATGATTACACCAGAGAACGT
CAGCAGTACAACAGCTAGCCCAGAACTGATTTTTTTTTTTTTTTTGTAAATTTGCGACTT
ATGTAAACGTGATTTTAAATCATAATTCATGTTGTAAATCAGACTCCAGCAATTTTTGTT
GTATGATTTTGTTTTTTGTAAAGTATAATTGTCCTTGTACAAAATGCTCATATTTAATTA
TGAACTGCTTTAAATCACTATCAAAGTTATAAGAAATGTTTGGCTTGTTGTGTGATGCAA
CAGATATATAGCCTTTTCAAGTCATTTTGTGTCTGGCCTTGGGGTTGGGACAGGGAGAGC
AGCAGCCATATCAGCTAGAAATTCAAAAGTGCATGTGATTTGGAGAAGTATTCCAAAATT
TTACAAAGCTGAACACCCATGGAGTTAATCAAAAACTATCTCAATGTTCTTAGCAGTGGG
ACTGGCATTGTTGATAAAGCTGGTCCCTACATTTAACTCTCTTTTAGGTTGTTCTCTCCT
TGTTGCCATGAGTATTGCAGGTAATACAATATATTCATAAGAATATCAATCTTGAGGCTA
AAATGCCTTGATTCTTTGCACCTCTTTTACAAGTCTTACATTTAATTACTAATTGATAAG
CAGCAGCTTCCTACAAATAGTGGGAGACTGCCACATTTTTGCTATCATGATTGGCTGGGC
CTGCTGCTGTTCCTAGTAAGATATTCTGAATTCCATTTTATCAATAAAGCTTGATTTAAC
AAACAAGACATTTAATCATGTATGTGTAATTCCTCCTTTTCCCGGTCCTTATTTTAAGAC
ACCATGCCATTGTAAATGAGAAATTTCTCATGGGGAAAGATGTTAGTCTCTTTTAATTGG
AAAATACTGTGACTCAAAGGCATAGATGGAACTGTTTCCCTTCTATTAGAATGACTATAA
AAGATTTAAGTCTCTGTTGTTCCATAATATATTTTAATGGGTTTCTTTCTAGCTGCTTAT
TTTTTCATTAAGGTGTGTATCAGCCTGAATTTGCCTATCATTTAATTAAAATAATTGTCA
AAGCTTGACAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2137696|pir||S65670

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2137696|pir||S65670

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1001-1193, - strand, RNAz p=0.998161

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1001-1193, - strand, RNAz p=0.998161

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               574-1208, gnl|bosTau2|chr3 (46187229-46186593)
               

               
               574-1208, gnl|Hg17|chr14 (59829186-59829824)
               

               
               574-1208, gnl|Mm7|chr12 (70744530-70745106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               574-1208, gnl|bosTau2|chr3 (46187229-46186593)
               

               
               574-1208, gnl|Hg17|chr14 (59829186-59829824)
               

               
               574-1208, gnl|Mm7|chr12 (70744530-70745106)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               sag (0.730861)
               

               
               tes (0.623441)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.730861)
               

               
               tes (0.623441)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	574-1208, gnl\|bosTau2\|chr3 (46187229-46186593)
	574-1208, gnl\|Hg17\|chr14 (59829186-59829824)
	574-1208, gnl\|Mm7\|chr12 (70744530-70745106)

	sag (0.730861)
	tes (0.623441)
	rec (0.519211)
	pro (0.512033)
	fat (0.294855)
	pty (0.285429)
	lnt (0.284616)
	sug (0.254582)
	cbe (0.239234)
	ece (0.229305)
	spc (0.226732)
	nms (0.213858)
	ldo (0.194005)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	liv (0.146284)
	spl (0.143184)
	che (0.136314)
	ste (0.135208)
	lyg (0.133103)
	bla (0.124347)
	tra (0.123092)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)