Non-Coding RNA Search

Ss1.1-Pig3-SRG8019J21.3

Sequence:


               
               TGAGTGATCCGAAAAGTAATAATGAAAACTAAATATGCGATTTTAATTATAGAAGAGATA
GGTATTAACATAGTCAACAGGAATCCACTTTGTAGAAATAACCTTTTACTGGTGACTAGA
TCTTTTGCCATACAAAGCTTATAGTATTTGTTTTCTGCTCTGAACACTTAAAATTCTAAG
ATTTGGTAGTGAAAACAGTTTTTAAAAACAAACTTCCTGGATAAGGCAAAGGTGAGGAGG
GGGAACGGGATGCCTTCTGATCATTCTAAATAACACTTTTCAGGGCACTATCATTTTCTC
TCTTTCTCTAATCACCTAGATTATGGTTGGTTTCCCCAGTGTTCTAACAGTACCATGCCT
ATATTCGAGCTGACCTGTAGACTTCAAGTTCTGTGTCTAGCCAGTGCAGGGTAGCAACGC
TGACTGAAGCCTTTGTTCTAGATCTTTCACCTATTTGAGGTAGCTGTTGGTGGCTTTGTT
ATTATTTTCTTTGTCTTTTCTCAACAAAGCAGATGGTGGGCACCTGTGTTTACATTGTAT
CTTCCTGCAATGTACTTGGCTTGATGAAGACAAGCAGGCTCCTCTATTGAGACTTATTAT
ATTTTTAGTTTTCATGGACACTTATTTAATCTTTTTTTTTATTGTACAGCAAGGTGCTCT
AAGTAATATTCTATAAAATATATTTAATAGAAATTTGAGTTCGATATTCATGGACATGAA
TACATGTATTTTTTTAAGAAATAAGTATTGTGTAACACTATGGCATTGCTTCTATAGCCA
AAGTCTAAAAATTTCTGGAACACTGACATGTAAAGACTACAGTTAATTCTGACACTGTAC
CTTATTAAAATAGGATGATTTGCATTTCGTAAAATTATCCTGCACATCAAGCTGCATGCC
TTAAGCCTAAAACTCTAGGATTGTGTTCATGGTAGAACAGTTTATCTGTTCAACACACAG
TGAAGCAAGGTCTATAGCGCTTCTTTAACTACCTTTGGAAATACTGTACAATGTTAGAAT
AATTTATTTTGCTTTACAGGAGTTTGTCATGTATTGACTTTAATATTGTATTTTGGTAAT
AAATTTTTTGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGATCCGAAAAGTAATAATGAAAACTAAATATGCGATTTTAATTATAGAAGAGATA
GGTATTAACATAGTCAACAGGAATCCACTTTGTAGAAATAACCTTTTACTGGTGACTAGA
TCTTTTGCCATACAAAGCTTATAGTATTTGTTTTCTGCTCTGAACACTTAAAATTCTAAG
ATTTGGTAGTGAAAACAGTTTTTAAAAACAAACTTCCTGGATAAGGCAAAGGTGAGGAGG
GGGAACGGGATGCCTTCTGATCATTCTAAATAACACTTTTCAGGGCACTATCATTTTCTC
TCTTTCTCTAATCACCTAGATTATGGTTGGTTTCCCCAGTGTTCTAACAGTACCATGCCT
ATATTCGAGCTGACCTGTAGACTTCAAGTTCTGTGTCTAGCCAGTGCAGGGTAGCAACGC
TGACTGAAGCCTTTGTTCTAGATCTTTCACCTATTTGAGGTAGCTGTTGGTGGCTTTGTT
ATTATTTTCTTTGTCTTTTCTCAACAAAGCAGATGGTGGGCACCTGTGTTTACATTGTAT
CTTCCTGCAATGTACTTGGCTTGATGAAGACAAGCAGGCTCCTCTATTGAGACTTATTAT
ATTTTTAGTTTTCATGGACACTTATTTAATCTTTTTTTTTATTGTACAGCAAGGTGCTCT
AAGTAATATTCTATAAAATATATTTAATAGAAATTTGAGTTCGATATTCATGGACATGAA
TACATGTATTTTTTTAAGAAATAAGTATTGTGTAACACTATGGCATTGCTTCTATAGCCA
AAGTCTAAAAATTTCTGGAACACTGACATGTAAAGACTACAGTTAATTCTGACACTGTAC
CTTATTAAAATAGGATGATTTGCATTTCGTAAAATTATCCTGCACATCAAGCTGCATGCC
TTAAGCCTAAAACTCTAGGATTGTGTTCATGGTAGAACAGTTTATCTGTTCAACACACAG
TGAAGCAAGGTCTATAGCGCTTCTTTAACTACCTTTGGAAATACTGTACAATGTTAGAAT
AATTTATTTTGCTTTACAGGAGTTTGTCATGTATTGACTTTAATATTGTATTTTGGTAAT
AAATTTTTTGTTAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               207-324, - strand, RNAz p=0.87462
               

               
               678-917, - strand, RNAz p=0.693644

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-324, - strand, RNAz p=0.87462
               

               
               678-917, - strand, RNAz p=0.693644

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-917, gnl|bosTau2|chr18 (35648256-35647343)
               

               
               1-917, gnl|Hg17|chr19 (37568205-37569417)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-917, gnl|bosTau2|chr18 (35648256-35647343)
               

               
               1-917, gnl|Hg17|chr19 (37568205-37569417)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               mgp (0.692042)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.692042)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	207-324, - strand, RNAz p=0.87462
	678-917, - strand, RNAz p=0.693644

	1-917, gnl\|bosTau2\|chr18 (35648256-35647343)
	1-917, gnl\|Hg17\|chr19 (37568205-37569417)

	mgp (0.692042)
	thg (0.253582)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	fty (0.17584)
	eye (0.170503)
	fhi (0.169578)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	ste (0.135208)
	ret (0.128733)
	sug (0.127291)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)
	eje (0.0988338)