Non-Coding RNA Search

Ss1.1-Pig3-SRG8019M04.3

Sequence:


               
               TTTCTGTGCTGGGTCTTCTCCAGTGCTTCCCTGACCGTTCGGGTCCCTTGGCCTCTCCAT
GGGGACCTTGAGGAGGAGGGTCAAGAGTCCCTGTGGGCGTGTGTGTATTTTCTGACCTGT
TATCTCCCAGGATGGCAGGTGTCCCACCCACCTGCCAGACCGACTCTCTGTTCTTATCCC
CGCTAACAAGGATAGGGGTGGGCAGTGACCTCATGTCCCTCAAGAAGGGCACAGGCTTCG
TGCCACCACCGAGCCTGACTGTCATCAGCCTGTGGTCCCCCTTGCCTGGTCTTAGGGCAG
AATCTGTGGAGACTGCTTCCAGAAAGCCTCTAGCTCTTGGGTTATAGATGAATTCCCTGG
TTCTGACTCTCCTGGGGCCTCCCCTCCCTGCGTGCTGCCTCTCTGAGGAGGAGGAGCCCA
GGGTCAGGGCTGGGCACTGGATTTATCCATCCCTCCTAGTTAACACCCATTCTTTCTTTA
TTTTGTTTTTTTCCTGTGTGTATTTCCTAATTTATTTACCTCTGTTTCCCCTTTTTTCTC
TTTCTTTTTTTTTAATTAAAGAGCAAAGCTTTTTATTACTTTGTAATTTAAAAAACTGAA
AAAAAAATACTGAAGAACTTTGGGGGGAATTTTGTACTTTTTTCCTGTGTAAATATTGGA
CTTTTTTGAGCTTTATTGTGGTTGTTAATTTGAAGTAATAAAGTAGAAAAGGATAAAGTG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTGTGCTGGGTCTTCTCCAGTGCTTCCCTGACCGTTCGGGTCCCTTGGCCTCTCCAT
GGGGACCTTGAGGAGGAGGGTCAAGAGTCCCTGTGGGCGTGTGTGTATTTTCTGACCTGT
TATCTCCCAGGATGGCAGGTGTCCCACCCACCTGCCAGACCGACTCTCTGTTCTTATCCC
CGCTAACAAGGATAGGGGTGGGCAGTGACCTCATGTCCCTCAAGAAGGGCACAGGCTTCG
TGCCACCACCGAGCCTGACTGTCATCAGCCTGTGGTCCCCCTTGCCTGGTCTTAGGGCAG
AATCTGTGGAGACTGCTTCCAGAAAGCCTCTAGCTCTTGGGTTATAGATGAATTCCCTGG
TTCTGACTCTCCTGGGGCCTCCCCTCCCTGCGTGCTGCCTCTCTGAGGAGGAGGAGCCCA
GGGTCAGGGCTGGGCACTGGATTTATCCATCCCTCCTAGTTAACACCCATTCTTTCTTTA
TTTTGTTTTTTTCCTGTGTGTATTTCCTAATTTATTTACCTCTGTTTCCCCTTTTTTCTC
TTTCTTTTTTTTTAATTAAAGAGCAAAGCTTTTTATTACTTTGTAATTTAAAAAACTGAA
AAAAAAATACTGAAGAACTTTGGGGGGAATTTTGTACTTTTTTCCTGTGTAAATATTGGA
CTTTTTTGAGCTTTATTGTGGTTGTTAATTTGAAGTAATAAAGTAGAAAAGGATAAAGTG
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               104-273, - strand, RNAz p=0.829875
               

               
               346-482, - strand, RNAz p=0.999823
               

               
               517-634, - strand, RNAz p=0.937793

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-273, - strand, RNAz p=0.829875
               

               
               346-482, - strand, RNAz p=0.999823
               

               
               517-634, - strand, RNAz p=0.937793

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               291-424, - strand, RNAmicro p=0.997299

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               291-424, - strand, RNAmicro p=0.997299

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               69-721, gnl|bosTau2|chr5 (66697512-66698179)
               

               
               69-721, gnl|Hg17|chr22 (37011897-37011197)
               

               
               69-721, gnl|Mm7|chr15 (79501586-79500812)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-721, gnl|bosTau2|chr5 (66697512-66698179)
               

               
               69-721, gnl|Hg17|chr22 (37011897-37011197)
               

               
               69-721, gnl|Mm7|chr15 (79501586-79500812)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	104-273, - strand, RNAz p=0.829875
	346-482, - strand, RNAz p=0.999823
	517-634, - strand, RNAz p=0.937793

	69-721, gnl\|bosTau2\|chr5 (66697512-66698179)
	69-721, gnl\|Hg17\|chr22 (37011897-37011197)
	69-721, gnl\|Mm7\|chr15 (79501586-79500812)

	ese (0.253004)
	fcc (0.197785)
	col (0.195008)
	che (0.136314)
	cov (0.132153)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)